PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_017967

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 564aa MW: 63613.5 Da PI: 5.0038

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_017967	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131	8.4e-41	72	197	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ppGfrF+Ptdeel+veyL +k+++k+ + + i++vdiy+ P L k ++a+++ewyf s+r+kky+ gkr+nr++ +gyWkatg dk++ s + DCAR_017967 72 PPGFRFKPTDEELIVEYLMRKIQNKPPHP-SRIHDVDIYRESPFYLSaKYAAANDSEWYFLSPRQKKYEMGKRPNRMAGNGYWKATGADKPIPS-PQG 167 9***********************877.67**********9556667888**********************************.666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+ ktLv+++g+++++ kt+W+m+eyr+ DCAR_017967 168 GVGVVKTLVYFQGTHKTSFKTEWIMKEYRA 197 8*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-44	66	240	IPR003441	NAC domain
PROSITE profile	PS51005	43.543	71	241	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	72	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MEKMKMETKT TFETTSAANF CNTENQNQPA MSDNRNSAAM PIPENQNSTA LVLQKYSNDY 60 ASEIDAYLQS FPPGFRFKPT DEELIVEYLM RKIQNKPPHP SRIHDVDIYR ESPFYLSAKY 120 AAANDSEWYF LSPRQKKYEM GKRPNRMAGN GYWKATGADK PIPSPQGGVG VVKTLVYFQG 180 THKTSFKTEW IMKEYRANEF PPSTLQEKPV NSAGKIRSAP AKSSKTCMKL DDYVLYKIYK 240 NKSHRSKNAT FDGEANNLEE DEANDLEEGE ANDQFQEPFE YFHDGVAQQE NIHQDHGVDE 300 YMVSGDGHFN QVTHVDNTHE IDYSANQQQQ QLWPVPYPNY LGYNSYMIPN HVSMVIPQMH 360 GNGFYDQNRE LMLHETLYNQ QHMARDYTPP ETMLPVDASN NVLTLNNVLN IPQEFCAAMS 420 PVDASNNVQA LPNISTEFSA AMSPVDASNN VQALSNVSKE FSAAMSPVDA SDDVQPLSNI 480 SREFSAAMSP ADAPNNVQPL SNISQEFSAA MPPVDAPDVV RVVKNELNIP QMQEGQYHQR 540 PVMTRPSTSS TYHPYHHPDH PNN*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MEKMKMETKT TFETTSAANF CNTENQNQPA MSDNRNSAAM PIPENQNSTA LVLQKYSNDY  60
ASEIDAYLQS FPPGFRFKPT DEELIVEYLM RKIQNKPPHP SRIHDVDIYR ESPFYLSAKY  120
AAANDSEWYF LSPRQKKYEM GKRPNRMAGN GYWKATGADK PIPSPQGGVG VVKTLVYFQG  180
THKTSFKTEW IMKEYRANEF PPSTLQEKPV NSAGKIRSAP AKSSKTCMKL DDYVLYKIYK  240
NKSHRSKNAT FDGEANNLEE DEANDLEEGE ANDQFQEPFE YFHDGVAQQE NIHQDHGVDE  300
YMVSGDGHFN QVTHVDNTHE IDYSANQQQQ QLWPVPYPNY LGYNSYMIPN HVSMVIPQMH  360
GNGFYDQNRE LMLHETLYNQ QHMARDYTPP ETMLPVDASN NVLTLNNVLN IPQEFCAAMS  420
PVDASNNVQA LPNISTEFSA AMSPVDASNN VQALSNVSKE FSAAMSPVDA SDDVQPLSNI  480
SREFSAAMSP ADAPNNVQPL SNISQEFSAA MPPVDAPDVV RVVKNELNIP QMQEGQYHQR  540
PVMTRPSTSS TYHPYHHPDH PNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-37	63	247	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-37	63	247	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-37	63	247	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-37	63	247	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-37	63	247	11	174	NAC domain-containing protein 19
3swm_B	2e-37	63	247	11	174	NAC domain-containing protein 19
3swm_C	2e-37	63	247	11	174	NAC domain-containing protein 19
3swm_D	2e-37	63	247	11	174	NAC domain-containing protein 19
3swp_A	2e-37	63	247	11	174	NAC domain-containing protein 19
3swp_B	2e-37	63	247	11	174	NAC domain-containing protein 19
3swp_C	2e-37	63	247	11	174	NAC domain-containing protein 19
3swp_D	2e-37	63	247	11	174	NAC domain-containing protein 19
4dul_A	2e-37	63	247	8	171	NAC domain-containing protein 19
4dul_B	2e-37	63	247	8	171	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254160.1	0.0	PREDICTED: uncharacterized protein LOC108224114
TrEMBL	A0A164YMD6	0.0	A0A164YMD6_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	2e-44	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	DCAR_017967