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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | DCAR_017496 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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| Family | ARF | ||||||||
| Protein Properties | Length: 939aa MW: 103724 Da PI: 5.8903 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 78.1 | 9.6e-25 | 176 | 277 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l
DCAR_017496 176 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVSAKKLAAGDSVLFI--RDEKSQL 270
99*********************999*****9555554.49************************************************..4567778 PP
EEEEE-S CS
B3 93 vvkvfrk 99
+++v+r+
DCAR_017496 271 LLGVRRA 277
9999997 PP
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| 2 | Auxin_resp | 112.5 | 4e-37 | 302 | 385 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s F+v+YnPra++seFvv+++k++k+++ + +s G+Rf m+feteds +rr++Gt+vg+sdldpvrWp+SkWr+L+
DCAR_017496 302 AAHAAANGSQFTVFYNPRACPSEFVVPLAKYRKSVYsTLMSKGTRFGMMFETEDSGKRRYMGTIVGISDLDPVRWPGSKWRNLQ 385
79*********************************9677899****************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.96E-45 | 164 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 8.2E-42 | 170 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.32E-21 | 175 | 276 | No hit | No description |
| SMART | SM01019 | 1.1E-23 | 176 | 278 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.126 | 176 | 278 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.0E-22 | 176 | 277 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.2E-32 | 302 | 385 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 939 aa Download sequence Send to blast |
MGSVEERAKS AGLISGAHSI IEDIKVLKEM HQDHSGHKKH ISSELWHACA GPLVTLPQVG 60 SLVYYFPQGH SEQTARPAVA APWSYSGVVE SEKEIIIWCT FMVAVSTNRT ATSQIPNYPN 120 LPSQLLCQVH NVTMHADKET DEIYAQMSLQ PVNSEKDVYP VPDFGIKGSK HPGEFFCKTL 180 TASDTSTHGG FSVPRRAAEK LFPQLDYSMQ PPTQELVVRD LHDNTWTFRH IYRGQPKRHL 240 LTTGWSMFVS AKKLAAGDSV LFIRDEKSQL LLGVRRASRQ QKALPSSVLS ADSMHIGILA 300 AAAHAAANGS QFTVFYNPRA CPSEFVVPLA KYRKSVYSTL MSKGTRFGMM FETEDSGKRR 360 YMGTIVGISD LDPVRWPGSK WRNLQVEWDE PVSRDKQNRV SPWETETLES LFIFPSLTSG 420 LKRPAQSAFW GSQNEWEEMM HRPFVRGNDN LNAEFPNPVM SSVWSEQLIK TLLKPQNSNC 480 PGSIAHVQQD SSANGFNLQG AKTWLQGMVN QKAPPIASEH KHTQTEDPSQ CQRINPISAE 540 PNLLQSDMPL KLEPQNVCGN QAQQRSESGL TKGEPEFASG QLSQYTYSGQ CNEEKQVSRA 600 TNPQNVGNSV LPINQSHDSP QFQSSPWLIQ AHMDPIQSSQ ADASNLSSLI PYPDANDWNS 660 SPFNCQPVAG FIKPPGPGLL TDATDPVLPS MGHEVWDHRM SNIESLAETR LYDMLPQEDS 720 CKRHCSTNSF GLKDISDESN KPSEFYHCLN FENSNGGSTV VDPSVSSTAI DDFCSLKDGE 780 LQNQSDYLVS NFSSCQDMQS QIMSASLAES HVFSLQEFPD SSGGASSSNT EFTDSGLLPN 840 ASWQQVAPRV RTYTKIQKAG SVGRSIDVSS FRNYDELCSE IERMFGLEGL LNDSKGSGWK 900 LVEFVGCVRS IRILSPSEVQ QMGEEGMQLL NSAAASLL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 407 | 5 | 389 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
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| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017253005.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A164YBB0 | 0.0 | A0A164YBB0_DAUCS; Auxin response factor | ||||
| STRING | VIT_18s0001g13930.t01 | 0.0 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5859 | 23 | 34 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | DCAR_017496 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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