PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017344
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 336aa    MW: 38509.2 Da    PI: 5.1985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017344genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.51.5e-5481371129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv +yL+kkv+++k++l +vike+d+yk+ePwdL +     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ 
  DCAR_017344   8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIKEIDLYKIEPWDLIEscrIGYEEQNEWYFFSHKDKKYPTGTRTNRATIAGFWKATGRDKAVYE- 103
                  69****************************.9***************743432334667**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  k +l+g++ktLvfykgrap+g+k+dW+mheyrle
  DCAR_017344 104 KFKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
                  899*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-595157IPR003441NAC domain
PROSITE profilePS5100558.6488157IPR003441NAC domain
PfamPF023652.3E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDTIEPCVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI KEIDLYKIEP WDLIESCRIG  60
YEEQNEWYFF SHKDKKYPTG TRTNRATIAG FWKATGRDKA VYEKFKLIGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLESDP NAPPQEEGWV VCRAFKKRAT SQTKNTQAWE SMSFYDEPSG  180
VNLVVDSLDY MTRQPSGFLR QNIMCKQELL DTEKLAFSQS DQFVQLPQLQ SPSLPSTKRP  240
TSSSVSVLAS ENHKGDRTKR SKNDSTVEVS TDWRDLDKFV ASQLSQEEKY EGVDDGNIGI  300
LSFGGHVSNS EMAMLLLESE FCEDGNKLNE FFNSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-50815815169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251392.10.0PREDICTED: NAC domain-containing protein 37
SwissprotQ9SL411e-149NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A161YKV60.0A0A161YKV6_DAUCS; Uncharacterized protein
STRINGVIT_04s0023g03110.t011e-166(Vitis vinifera)
STRINGEOX908921e-164(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-141vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]