PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017272
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 571aa    MW: 62599.5 Da    PI: 4.4288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017272genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.96.5e-1062045692373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +++++cA+  +s +   a + L rl++ +s++gdp++R+a+yfteAL ++l+      +k+ +  et+   s+e   ++k+++++ P+ kf+hltaN
  DCAR_017272 204 LNAVIDCAKLAES-ESDSAIKSLIRLRDSVSETGDPTERVAFYFTEALYSKLSV-----SKTPTIFETT---SEEFCLSYKALNDAVPYSKFAHLTAN 292
                  578999***7766.5566677789****************************97.....6666777777...899*********************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R +g+p ++Ri ++ +p+ g   + ++++tg+rL++fA+ l+++fef++ v   +++l+ +++
  DCAR_017272 293 QAILEATEEATKIHIVDFGIVQGVQWAALLQALATRLAGKPeKIRISAIPAPALGdsPAAAMNATGNRLREFAKVLDLDFEFEP-VFIPVQELNESSF 389
                  *************************************66666**********99998999************************.6899********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+++E++aVn++lql++ l e+ ++ +   +vLkl ksl+Pk+v++ e ea++n+  F+ r+ +al+yys+lf+sl+ ++ r+s er  vEr llgr
  DCAR_017272 390 RVEQDEVIAVNFMLQLYNYLGETNDVVE---SVLKLAKSLNPKIVTLGEYEASLNRVAFFPRVKNALKYYSSLFESLDPNFTRDSPERLEVERLLLGR 484
                  ********************88877777...******************************************************************* PP

         GRAS 293 eivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                  +i  v+ +++++  rrer+e +e+W + +++aGF++v ls++a++qak ll  ++ s  y++ ++   ++   W++ pL++vS+W
  DCAR_017272 485 RIAGVIGQSEDAgtRRERMEGKEEWGMLMKKAGFEAVGLSHYAVSQAKILLWYCNySSSYSLVDSPPGFIsVAWNNVPLLTVSSW 569
                  ******99988777*****************************************9999****99888888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.492177548IPR005202Transcription factor GRAS
PfamPF035142.3E-103204569IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQH QQHLSPFALS PCSQILSNAP AYGFSAPPFP  60
DPFLPEGTEP VFHFPSLDPH NQSFRFTDFG NGPGGEFDSD DWMESLIGGA DSTASSNLQS  120
GCDTWQNSSE FNLYAAAAAD PFPPSPDLDS VHVIFPDVSK TAPAPPQWVP LPPQTTVEAV  180
NKNDDVVAVA SASSPEQIST KPLLNAVIDC AKLAESESDS AIKSLIRLRD SVSETGDPTE  240
RVAFYFTEAL YSKLSVSKTP TIFETTSEEF CLSYKALNDA VPYSKFAHLT ANQAILEATE  300
EATKIHIVDF GIVQGVQWAA LLQALATRLA GKPEKIRISA IPAPALGDSP AAAMNATGNR  360
LREFAKVLDL DFEFEPVFIP VQELNESSFR VEQDEVIAVN FMLQLYNYLG ETNDVVESVL  420
KLAKSLNPKI VTLGEYEASL NRVAFFPRVK NALKYYSSLF ESLDPNFTRD SPERLEVERL  480
LLGRRIAGVI GQSEDAGTRR ERMEGKEEWG MLMKKAGFEA VGLSHYAVSQ AKILLWYCNY  540
SSSYSLVDSP PGFISVAWNN VPLLTVSSWC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1422005691374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253676.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A164Y5V40.0A0A164Y5V4_DAUCS; Uncharacterized protein
STRINGEOX911130.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-175GRAS family protein