PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017243
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 512aa    MW: 53798.2 Da    PI: 6.9244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017243genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056587123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  DCAR_017243 65 FVCEICNKGFQRDQNLQLHRRGH 87
                 89*******************88 PP
2zf-C2H211.80.00072141163123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H + +
  DCAR_017243 141 WKCEKCSKKYAVQSDWKAHSKIC 163
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-76487No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355100106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.2E-7136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MPEIIDSSAA VNDTTASGDA SVLSSGDQMP PPKAEKKKRN LPGMPDPDAE VIALSPKTLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSSKE IRKRVYVCPE ESCIHHDPSR  120
ALGDLTGIKK HYFRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRRD  180
SFITHRAFCD ALAVESAKEP VAPPSVEEEP EPQTVDASPP SPLPPQQPSS PPSVPTSSAA  240
TSMGLPDQTA AIDSAQLQEN PVSKSTQILD DTPTVVQVAS LTGSCSSISS SSSNGSTRST  300
VFASLFASST ASGSMQSQAT GFTDFIHATA QADPMHDMGP SLSIEPTSLS LATNHGSSIF  360
GTAGQECRQY ALPPQPAMSA TALLQKAAQM GATATNASLL RGLGVVSSSS SAGQQHWNGQ  420
QFESGSASLA AGLGLGLPYD GGSGLKELMM GTPSVFDPKY TTLDLLGLGM AAGGGPTGEL  480
SALMTSIGGG LDASTSFGTA EYSGEKYGRS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34137198364Zinc finger protein JACKDAW
5b3h_F2e-34137198364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253763.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-169IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A164Y5920.0A0A164Y592_DAUCS; Uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]