PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_017156

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 313aa MW: 34625.6 Da PI: 8.9592

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_017156	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161	4.6e-50	15	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF+Ptdeel+v+yL++kv+g++ ++ i +vd+yk++Pw Lp k+ ++kewyfFs+rd+ky++g+r+nr + sgyWkatg+dk + s +g+ DCAR_017156 15 LPPGFRFNPTDEELMVNYLCPKVAGETSSF-ILIGDVDLYKHDPWVLPGKALFGDKEWYFFSPRDRKYPNGSRPNRGAGSGYWKATGTDKVIAS-EGK 110 79***********************888.88***********8777899*****************99**********99.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 g+kk+Lvfy g+ap+g+kt+W+mheyrl DCAR_017156 111 RLGIKKSLVFYIGKAPTGSKTNWIMHEYRL 140 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-64	11	164	IPR003441	NAC domain
PROSITE profile	PS51005	58.9	15	163	IPR003441	NAC domain
Pfam	PF02365	3.6E-26	16	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGVAETVDPL SKLSLPPGFR FNPTDEELMV NYLCPKVAGE TSSFILIGDV DLYKHDPWVL 60 PGKALFGDKE WYFFSPRDRK YPNGSRPNRG AGSGYWKATG TDKVIASEGK RLGIKKSLVF 120 YIGKAPTGSK TNWIMHEYRL LEPQRTKGSS KLDDWVLCRI YKKNSSAQRA GNMARTECSH 180 GSSSSTSFQF DDKQNVQNAG CYSGNNIDWA PLAGLNNTMT GHSGVIQFQL HNETQQGAMN 240 TMNYNQTNMY PSVDTGYGKV AEQEVQSGFP NQRADNSGFL YPNAYAQGFI NSVDPYAAIR 300 YQNQPGNSGN RN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-98	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-98	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-98	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-98	1	169	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-98	1	169	4	171	NAC domain-containing protein 19
4dul_B	9e-98	1	169	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250330.1	0.0	PREDICTED: NAC domain-containing protein 72
Swissprot	A0A3Q7HH64	1e-100	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A164Y333	0.0	A0A164Y333_DAUCS; Uncharacterized protein
STRING	evm.model.supercontig_80.93	1e-109	(Carica papaya)
STRING	XP_002533913.1	1e-109	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	4e-98	NAC domain containing protein 19

Link Out ? help Back to Top
Phytozome	DCAR_017156

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]