PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WOX | ||||||||
Protein Properties | Length: 236aa MW: 26648.6 Da PI: 8.0978 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.7e-15 | 31 | 89 | 2 | 55 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 r R+++t++q+++Le F++ + +p ++ + + k+l +++ ++++WFqNrR ++ DCAR_016960 31 RVRWKPTPQQITILEHIFNSgTVNPPKDVTTNIRKQLeqfgPVEDVNIFYWFQNRRSRW 89 67*****************99****************99999****************9 PP | |||||||
2 | Wus_type_Homeobox | 90 | 2.2e-29 | 30 | 92 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r RW Ptp+Qi+iLe++++sG+++P+k+ +++i+++Le++G +ed N+fyWFQNr++R ++ DCAR_016960 30 VRVRWKPTPQQITILEHIFNSGTVNPPKDVTTNIRKQLEQFGPVEDVNIFYWFQNRRSRWSRR 92 578********************************************************6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-13 | 25 | 96 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 25 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.754 | 27 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-4 | 29 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.9E-13 | 31 | 89 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MQESHQSPNR QPNDRTAASG SGSKTTNETV RVRWKPTPQQ ITILEHIFNS GTVNPPKDVT 60 TNIRKQLEQF GPVEDVNIFY WFQNRRSRWS RRMRQMRSED SAAPVDSVCS GVNNHMNLSH 120 PGFTFEPSTQ PCFFSDYNAN IDFYNPSGPY TNHNYQQNSG ASMFPDNYQQ NVNPAGGCIR 180 VFINGKATKL ATRPLDMRGM FGQDLILVHP TGLPVDEFGF DLQHGESYFL VPKPT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251957.1 | 1e-178 | PREDICTED: WUSCHEL-related homeobox 6-like | ||||
TrEMBL | A0A164XXZ2 | 1e-176 | A0A164XXZ2_DAUCS; Uncharacterized protein | ||||
STRING | Al_scaffold_0006_1694 | 2e-46 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 3e-43 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016960 |