PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016866
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 488aa    MW: 53880.4 Da    PI: 9.1781
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016866genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17167201135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  DCAR_016866 167 CSHCLSQKTPQWRAGPAGPKTLCNACGVRYKSGRL 201
                  *******************************9986 PP
2GATA55.11e-17414448135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  DCAR_016866 414 CSHCLSQKTPQWRAGPAGPKTLCNACGVRYKSGRL 448
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-16161215IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.556161197IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15162224No hitNo description
Gene3DG3DSA:3.30.50.104.0E-14162198IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.92E-12166213No hitNo description
PfamPF003201.4E-15167201IPR000679Zinc finger, GATA-type
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.556408444IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-16408462IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15409471No hitNo description
Gene3DG3DSA:3.30.50.104.0E-14409445IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.92E-12413460No hitNo description
PROSITE patternPS003440414439IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15414448IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAFCRNVTLS GGLPSEHQPY HAPATLGSLD DLFSGNTTVE EEDINLEWLS VFIEDCLSTP  60
GNCLLPPASS TLPLDPVPEQ PATVEAASMP LRSPPGASRA RSKRSRVPCK NPRKSMRWSP  120
DPPLLHQAYW LADSEPIFPK YQEQSIAKEG NMGSSFQGLN GQQPRRCSHC LSQKTPQWRA  180
GPAGPKTLCN ACGVRYKSGR LLPEYRPAKS PTFVSYKHSN SHKKVLEMRK RWYIKHRLSL  240
TPPLELTMAF CRNVTLSGGL PSEHQPYHAP ATLGSLDDLF SGNTTVEEED INLEWLSVFI  300
EDCLSTPGNC LLPPASSTLP LDPVPEQPAT VEAASMPLRS PPGASRARSK RSRVPCKNPR  360
KSMRWSPDPP LLHQAYWLAD SEPIFPKYQE QSIAKEGNMG SSFQGLNGQQ PRRCSHCLSQ  420
KTPQWRAGPA GPKTLCNACG VRYKSGRLLP EYRPAKSPTF VSYKHSNSHK KVLEMRSMSV  480
LSSFNGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249935.11e-174PREDICTED: GATA transcription factor 2-like
RefseqXP_017250106.11e-174PREDICTED: GATA transcription factor 2-like
TrEMBLA0A164XV430.0A0A164XV43_DAUCS; Uncharacterized protein
STRINGXP_010276403.14e-70(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-38GATA transcription factor 9