PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016858
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 378aa    MW: 42870.8 Da    PI: 8.059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016858genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.8e-54191511128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdee++++yL++k+ + ++++ +++ evd++k+ePwdLpkk+k +ekew+fF++rd+ky+tg r+nrat++gyWkatgkdke+++k   
  DCAR_016858  19 LPPGFRFHPTDEEIITHYLAPKIVNPRFNA-TAVGEVDLNKSEPWDLPKKAKMGEKEWFFFCQRDRKYPTGMRTNRATEQGYWKATGKDKEIYRKakn 115
                  79*************************999.88***************99999*****************************************9888 PP

          NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++lvg+kktLvfy+grapkgek++Wvmhe+r+
  DCAR_016858 116 rgdGQQLVGMKKTLVFYRGRAPKGEKSNWVMHEFRV 151
                  8877777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-6215179IPR003441NAC domain
PROSITE profilePS5100558.4519178IPR003441NAC domain
PfamPF023652.1E-2820151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEGGSIVVDQ QGEQELLNLP PGFRFHPTDE EIITHYLAPK IVNPRFNATA VGEVDLNKSE  60
PWDLPKKAKM GEKEWFFFCQ RDRKYPTGMR TNRATEQGYW KATGKDKEIY RKAKNRGDGQ  120
QLVGMKKTLV FYRGRAPKGE KSNWVMHEFR VEGKLSYQNF ANKTAAKDEW VVCKVFHKNA  180
TTAPLINKKN SMDSFVEGLL DSNSLPPLVD SPYAANANIN ATTDTVTTNQ LQDSKGTIYP  240
PSFFGSSDQK FTNQMQQHGY MAPAPGITQN THFYSYDQVP NTMFYSQNVN FPYQASSSLG  300
NYLHQQRFDS VPNKRQCKVE QYSSNLTRSQ DTGLSTELTA EISSKQQMDR SKPTYNEDAE  360
GTSASHLADF DPFWDFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511718215169NO APICAL MERISTEM PROTEIN
1ut4_B3e-511718215169NO APICAL MERISTEM PROTEIN
1ut7_A3e-511718215169NO APICAL MERISTEM PROTEIN
1ut7_B3e-511718215169NO APICAL MERISTEM PROTEIN
3swm_A3e-511718218172NAC domain-containing protein 19
3swm_B3e-511718218172NAC domain-containing protein 19
3swm_C3e-511718218172NAC domain-containing protein 19
3swm_D3e-511718218172NAC domain-containing protein 19
3swp_A3e-511718218172NAC domain-containing protein 19
3swp_B3e-511718218172NAC domain-containing protein 19
3swp_C3e-511718218172NAC domain-containing protein 19
3swp_D3e-511718218172NAC domain-containing protein 19
3ulx_A4e-511717813168Stress-induced transcription factor NAC1
4dul_A3e-511718215169NAC domain-containing protein 19
4dul_B3e-511718215169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250329.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9SQQ61e-105NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A164XUX70.0A0A164XUX7_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g07640.t011e-116(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-107NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]