PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_016827

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 302aa MW: 34772 Da PI: 6.672

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016827	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.2	2.3e-51	35	162	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPtdeelv +yL++kve++++++ e ik++diyk+ePwdLpk + ++kewyfF++r +ky++++r+nr+t+sg+Wkatg dk+++s+ ++ DCAR_016827 35 LPGFRFHPTDEELVGFYLRRKVEKRPIRI-ELIKHIDIYKYEPWDLPKGSDVGDKEWYFFCRRGRKYRNSTRPNRVTSSGFWKATGIDKPIYSEarRD 131 59*************************.89***********988899************************************85444 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 vglkk+Lv+y+g+a kg+ktdW+mhe+rl DCAR_016827 132 LCVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 162 45*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-54	34	198	IPR003441	NAC domain
PROSITE profile	PS51005	52.689	34	198	IPR003441	NAC domain
Pfam	PF02365	4.3E-26	36	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDKDDQMVGG VSLENTCNWE LQDTAGEQDE DDTRLPGFRF HPTDEELVGF YLRRKVEKRP 60 IRIELIKHID IYKYEPWDLP KGSDVGDKEW YFFCRRGRKY RNSTRPNRVT SSGFWKATGI 120 DKPIYSEARR DLCVGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPPDYQTT KTPSKVIELN 180 DAIFQEAEVW TLCRILKRNA SPKKDQKNAS KRNTCTGGSD NIHGLDINTF QQSPVSTNQQ 240 INEYQPAVFP NNQIVTDLNH LVMGPVTSSN FSSPEMNEFV QYADWEELRS FAEFAGNQCI 300 L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	36	204	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	36	204	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	36	204	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	36	204	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	36	204	22	174	NAC domain-containing protein 19
3swm_B	1e-49	36	204	22	174	NAC domain-containing protein 19
3swm_C	1e-49	36	204	22	174	NAC domain-containing protein 19
3swm_D	1e-49	36	204	22	174	NAC domain-containing protein 19
3swp_A	1e-49	36	204	22	174	NAC domain-containing protein 19
3swp_B	1e-49	36	204	22	174	NAC domain-containing protein 19
3swp_C	1e-49	36	204	22	174	NAC domain-containing protein 19
3swp_D	1e-49	36	204	22	174	NAC domain-containing protein 19
4dul_A	1e-49	36	204	19	171	NAC domain-containing protein 19
4dul_B	1e-49	36	204	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251742.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	4e-83	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A161ZYX6	0.0	A0A161ZYX6_DAUCS; Uncharacterized protein
STRING	XP_009778771.1	1e-103	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-85	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	DCAR_016827

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]