PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016759
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 308aa    MW: 34973.9 Da    PI: 4.5199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016759genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-141462148
                     TSSS-HHHHHHHHHHH.HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdav.kqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd v + ++  +W+ +++  g+ R++k+c++rw +yl
      DCAR_016759 14 KGPWTAEEDKKLVDFVlANHPQCCWREVPKNAGLLRCGKSCRLRWTNYL 62
                     79************984567777**********99************97 PP
2Myb_DNA-binding49.21.2e-1572112547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++l++d+++qlG++ W++Ia++m+ gRt++++k+ w++y
      DCAR_016759  72 SEYEEKLIIDLHAQLGNR-WSRIASHMP-GRTDNEIKNLWHTY 112
                      677***************.*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-19564IPR009057Homeodomain-like
PROSITE profilePS5129413.248962IPR017930Myb domain
SuperFamilySSF466891.57E-2411109IPR009057Homeodomain-like
SMARTSM007172.6E-91364IPR001005SANT/Myb domain
PfamPF002498.4E-131462IPR001005SANT/Myb domain
CDDcd001671.36E-81662No hitNo description
PROSITE profilePS5129424.21863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2365117IPR009057Homeodomain-like
SMARTSM007179.4E-1267115IPR001005SANT/Myb domain
PfamPF002491.7E-1372112IPR001005SANT/Myb domain
CDDcd001671.73E-975113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRRPCCDKV GLNKGPWTAE EDKKLVDFVL ANHPQCCWRE VPKNAGLLRC GKSCRLRWTN  60
YLRPDLKRGL LSEYEEKLII DLHAQLGNRW SRIASHMPGR TDNEIKNLWH TYIKKKLSKM  120
GIDPVTHKPI LAGPPNGNYQ DHDALSQKEA QKSREEMQEQ DKGQENCDGI SSLEESIISN  180
TDDYRLDKEQ VAMDTSNGFS VPEVPWSIPH EFCVSSSDQQ SSCSSTTFSD TSAVTLSMSD  240
INSILEDLRF LPSFEDWQSD DNSKNYVEPM GVPYDDDFAD WDWLINDFDI DNIDHEIVQS  300
LPDPATA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250638.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U72e-77MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A164XRT70.0A0A164XRT7_DAUCS; Uncharacterized protein
STRINGXP_009792876.11e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-79myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]