PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016564
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Nin-like
Protein Properties Length: 320aa    MW: 37051.9 Da    PI: 5.0904
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016564genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.31.1e-26157205452
       RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   ++ e++skyF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ s+
  DCAR_016564 157 VLTKEEISKYFYMPITQAAKELNIGLTLLKKRCRELGIPRWPHRKLMSI 205
                  6899******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.019146225IPR003035RWP-RK domain
PfamPF020428.5E-23158205IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSSLEPWNAW SNHQVEAKQE FAQDLSFPSQ CSQVDVQWDF GMQESEKFTS FPLLDMFEYS  60
DPLYASLDIV PAEENTTLMQ DDLEYFFWKL DDEVMGGFRD FPFKYDEPPL LLSYDSSDSN  120
NVTNGDMNGS GDQEEEDKKK RISSCRNVAK GQRSSNVLTK EEISKYFYMP ITQAAKELNI  180
GLTLLKKRCR ELGIPRWPHR KLMSIQTLIR NVKELEKEED GGEKLRQAVG MLEQEKKLLE  240
KSPNLKLMEN TKRLRQACFK ANYKRRKNMM DTESASREMI VDGRDHFDQY SLPFADPVAL  300
PXSVLINRPR LQGMALKKM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250597.10.0PREDICTED: protein RKD2
TrEMBLA0A161YJ740.0A0A161YJ74_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42742142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-43RWP-RK domain-containing protein