PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016533
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 311aa    MW: 35634.5 Da    PI: 4.4781
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016533genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-1975129357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  k+++++++q+e Le+ Fe ++++  e++ +LAk +gL+ rqV +WFqNrRa++k+
  DCAR_016533  75 KKRRLKADQIEFLEKSFEADNKLEPERKVKLAKDIGLQPRQVAIWFQNRRARWKN 129
                  566899***********************************************95 PP
2HD-ZIP_I/II122.22.6e-3974164191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+++q+++LE+sFe+++kLeperKv+la+++glqprqva+WFqnrRAR+k+k lE+dye+L+++y++lk++ e+L ke+++L++++
  DCAR_016533  74 EKKRRLKADQIEFLEKSFEADNKLEPERKVKLAKDIGLQPRQVAIWFQNRRARWKNKSLERDYEVLQDSYNSLKAQYENLVKEKDKLKDQV 164
                  69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-1863131IPR009057Homeodomain-like
PROSITE profilePS5007117.03870130IPR001356Homeobox domain
SMARTSM003891.5E-1873134IPR001356Homeobox domain
CDDcd000869.21E-1775131No hitNo description
PfamPF000462.1E-1675129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-2077137IPR009057Homeodomain-like
PRINTSPR000313.4E-5101110IPR000047Helix-turn-helix motif
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PRINTSPR000313.4E-5110126IPR000047Helix-turn-helix motif
PfamPF021831.2E-12130171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEGRGLLYSA AAGSSLNANA LLHNQLPFSF LDSRSMVSFK DISGRMHSER SFFRSFGQDG  60
NEDEDFDEYF HQPEKKRRLK ADQIEFLEKS FEADNKLEPE RKVKLAKDIG LQPRQVAIWF  120
QNRRARWKNK SLERDYEVLQ DSYNSLKAQY ENLVKEKDKL KDQVLDLTDK LKEKEKECLD  180
VVNTQTLSES PQQERVGIEV SKGEVSIESI STYKQEDNLS VKSDLVNSDS SNYTDGVRSS  240
LLEPGDSSNF FDMDQSDRSQ DEEDNLRRLL LPPLAYMFPM IGDISSPDLP ASTCSSGLPI  300
EEEPYDFWAY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248785.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A164XKF10.0A0A164XKF1_DAUCS; Uncharacterized protein
STRINGEOY217131e-111(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-38homeobox 1