PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016194
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 310aa    MW: 34486.1 Da    PI: 6.7885
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016194genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.2e-17197231135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C + kTp+WR gp g+ktLCnaCG+++++ +l
  DCAR_016194 197 CLHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 231
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.6E-7918287IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.018191227IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-15191241IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-13192228IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-14193254No hitNo description
CDDcd002022.69E-13196243No hitNo description
PfamPF003206.7E-15197231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440197222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEASDMFVGN YFAAGEPQFL SENYYFNGNQ QVDNNNQFAI DDLLLDFPKE DDVMNDAFFH  60
SIAADSSSPV TAVHSCNSSG SGNISSGSFT DAQFSGSELC VPYDDLAELE WLSSFVEESF  120
SSDDMQNLQF IPTSVTTNYK NSPIFNADVS VPGKARSKRS RAAPCDWSSR LLHLSPAKAH  180
PRRRENSAEA SGSGRKCLHC ASEKTPQWRT GPLGPKTLCN ACGVRFKSGR LVPEYRPAAS  240
PTFVSAKHSN SHRKVVELRR QKDVREAQQQ HQHSHPQQHQ HQMINQRTMF GASNGDEYLI  300
HHPQFNHML*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250112.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-77GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A161YIA40.0A0A161YIA4_DAUCS; GATA transcription factor
STRINGXP_009802675.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-67GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]