PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_015850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24669.3 Da PI: 4.3968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.9e-18 | 119 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIr p ++g r++lg+++ +eeAa a+++a+ kl+g DCAR_015850 119 RYRGVRRRP-WGKFAAEIRNPAKRG--SRIWLGTYDRPEEAALAYDKAAFKLRG 169 69*******.**********97765..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.28E-31 | 118 | 178 | No hit | No description |
SMART | SM00380 | 5.3E-36 | 119 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.223 | 119 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-13 | 119 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 119 | 178 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 119 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-13 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-13 | 159 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MFSSAALSDS DLAVLESIRQ HLFEDTDVLE CCFDNTSPCS EQTYGSEVSL DDLLMDEENT 60 DQVASFIFDF SKETSCCSLD DFDIIQGPLY NDPVEFEDPG KIELEVVAAE NGAAQKWQRY 120 RGVRRRPWGK FAAEIRNPAK RGSRIWLGTY DRPEEAALAY DKAAFKLRGS RAKLNFPDML 180 EPVDVAARCQ STEPTASSSS SSSTSTSDFQ SSKRRKTRPL A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-28 | 116 | 177 | 2 | 63 | ATERF1 |
3gcc_A | 8e-28 | 116 | 177 | 2 | 63 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245365.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A165A261 | 1e-161 | A0A165A261_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-32 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_015850 |