PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015841

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ERF

Protein Properties

Length: 198aa MW: 22283 Da PI: 8.9503

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015841	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.4e-18	92	143	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+r+++ +g+++AeIr p + k kr++lg++ t+e+Aa a+++a+ k++g DCAR_015841 92 SRYRGIRRRP-WGKFAAEIRSPAK--KGKRVWLGTYETPEDAALAYDRAAFKIHG 143 79******.******944..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.3E-13	92	143	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.48E-23	92	152	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.5E-31	93	152	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.171	93	151	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-35	93	157	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-10	94	105	IPR001471	AP2/ERF domain
CDD	cd00018	1.61E-25	101	153	No hit	No description
PRINTS	PR00367	3.9E-10	117	133	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MSQEIFMESD LSYLLQSIEH QLLDDSELSN SFPLVNPWES STEPILNNFF YMENTVEHSF 60 NMEYTPQLEV INEHKEKEKA TVPVTHPPQE RSRYRGIRRR PWGKFAAEIR SPAKKGKRVW 120 LGTYETPEDA ALAYDRAAFK IHGSAAKLNF PHLIGKNIPE PIKVTPRQRT STSSSCSSSS 180 SSSNSGSAHK KSAKAIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-28	94	151	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246054.1	1e-145	PREDICTED: ethylene-responsive transcription factor 2-like
Swissprot	Q8L9K1	3e-40	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A165A2C2	1e-144	A0A165A2C2_DAUCS; Uncharacterized protein
STRING	Solyc01g090310.2.1	2e-54	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	3e-42	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	DCAR_015841

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]