PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015694
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 404aa    MW: 46020.2 Da    PI: 7.5784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015694genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.91e-45111343128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  pGfrF+P +eelv +yL++k+eg+k ++ +vi+e+d +++ePwdLp k+++ +++ewyfFs+r  ky++g + +rat+ gyWkatgk+++v+s + ++
  DCAR_015694  11 PGFRFSPAEEELVLHYLRRKIEGSK-KC-DVISEIDAVRHEPWDLPeKSATPSDNEWYFFSPRGMKYTKGGQIRRATQFGYWKATGKQRDVKS-GARV 105
                  9**********************99.55.79***************555566899**************************************.999* PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  vg ++tLvf+kg+ap+g++t+W+mhey++
  DCAR_015694 106 VGSRRTLVFHKGHAPNGKRTEWIMHEYSM 134
                  ***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-486149IPR003441NAC domain
PROSITE profilePS5100550.5829150IPR003441NAC domain
PfamPF023653.0E-2411133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEMRVSTRSC PGFRFSPAEE ELVLHYLRRK IEGSKKCDVI SEIDAVRHEP WDLPEKSATP  60
SDNEWYFFSP RGMKYTKGGQ IRRATQFGYW KATGKQRDVK SGARVVGSRR TLVFHKGHAP  120
NGKRTEWIMH EYSMSGTPQE SFVVCRVRNR KNIELKCNDI PPIELNQSLS GESSISTSVS  180
NLLHTANNVD HMGMFQELTT AYQCNNPHSV DHFDSEYDKK SKGMVLRHES CSLPKFQCTE  240
GATENSFADM LNDDIMMLDD SSFANHLGND MLNEEFMDYK FEQPKESFPS ATLATPTLQE  300
TSPPIIIIRS RKGNKPRNPL PFQGTAPRRI RMKCQYMDEP SVEASGIRDE MYQNVAESAE  360
FPRCLLTTVL DITVNHRHVT VFVVLFLLVS VSGLFTNFVR QLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-361115217170Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246601.10.0PREDICTED: NAC domain-containing protein 40-like
TrEMBLA0A165A5F20.0A0A165A5F2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41542243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-60NTM1-like 8