PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_015676

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 292aa MW: 32825.4 Da PI: 6.6692

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015676	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152	2.7e-47	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPt+eel+ +yLk+ + gkkl++ ++i ++iy ++Pw Lp+ +k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++++ ++ DCAR_015676 12 PGFRFHPTEEELIEFYLKNTLYGKKLHC-DIIGVLNIYGYDPWYLPELAKIGEREWYFFVPRDTKHGSGGRPNRTTANGFWKATGSDRKIVTLsdPKR 108 9*************************.99***********8888999*********************************98766778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++glkktLvfykgrap+g+ktdWvm+eyrl DCAR_015676 109 VIGLKKTLVFYKGRAPRGTKTDWVMNEYRL 138 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.319	10	156	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-56	11	156	IPR003441	NAC domain
Pfam	PF02365	1.5E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGESSPTKLE LPGFRFHPTE EELIEFYLKN TLYGKKLHCD IIGVLNIYGY DPWYLPELAK 60 IGEREWYFFV PRDTKHGSGG RPNRTTANGF WKATGSDRKI VTLSDPKRVI GLKKTLVFYK 120 GRAPRGTKTD WVMNEYRLPA SCPLHKDIVL CKIYRKATSL KVLEQRAAME EEIMKTNNST 180 CSDSPSPQTT SPVISMDTTA SFSSKDQDLA AAGAKESFMK EEIVEEEDTM LSFPSGEAGA 240 NTKCSSLHLP TGMESMDLQL PKFSSQDPFL TPLCSPWLDN WFISYANVYN L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-48	12	156	17	168	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017247587.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q10S65	5e-92	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A162A6N7	0.0	A0A162A6N7_DAUCS; Uncharacterized protein
STRING	Gorai.005G257800.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-103	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	DCAR_015676

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]