PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015528
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 1264aa    MW: 140521 Da    PI: 7.3768
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015528genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.35e-149991030132
         GATA    1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32  
                   C++C++ kT +WR gp g+ktLC aCG+ y++
  DCAR_015528  999 CAHCQADKTLQWRDGPMGPKTLCDACGVSYKS 1030
                   ******************************97 PP
2GATA551.1e-1711741208135
         GATA    1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35  
                   C++C++  Tp+WR gp+g+k+LCnaCG++yr+ +l
  DCAR_015528 1174 CAHCQVMRTPQWRDGPNGPKSLCNACGVRYRSGRL 1208
                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082635.7E-92676IPR013210Leucine-rich repeat-containing N-terminal, plant-type
Gene3DG3DSA:3.80.10.102.0E-6560342IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520583.74E-5961415IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369410129154IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036995203226IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.517205227IPR001611Leucine-rich repeat
PROSITE profilePS514504.94229252IPR001611Leucine-rich repeat
SMARTSM0036976251275IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514504.809253275IPR001611Leucine-rich repeat
PfamPF138553.6E-8277336IPR001611Leucine-rich repeat
PROSITE profilePS514506.095277300IPR001611Leucine-rich repeat
SMARTSM00369340299322IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514504.532301322IPR001611Leucine-rich repeat
PROSITE profilePS514505.794325347IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.101.9E-51346585IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003692.8346370IPR003591Leucine-rich repeat, typical subtype
PfamPF005600.39348368IPR001611Leucine-rich repeat
PROSITE profilePS514506.626348370IPR001611Leucine-rich repeat
PRINTSPR000198.6E-6349362No hitNo description
SMARTSM0036995395418IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520581.33E-51397595IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514507.173397416IPR001611Leucine-rich repeat
PROSITE profilePS514505.24419441IPR001611Leucine-rich repeat
SMARTSM0036992442464IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.534443464IPR001611Leucine-rich repeat
PfamPF138551.9E-7443503IPR001611Leucine-rich repeat
SMARTSM00369130490513IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.15492513IPR001611Leucine-rich repeat
PROSITE profilePS514504.94516537IPR001611Leucine-rich repeat
PROSITE profilePS514504.508540561IPR001611Leucine-rich repeat
PROSITE profilePS514504.555567588IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.101.3E-23624727IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.2E-6635691IPR001611Leucine-rich repeat
SuperFamilySSF520581.33E-51636733IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003698.6654678IPR003591Leucine-rich repeat, typical subtype
PRINTSPR000198.6E-6654667No hitNo description
PROSITE profilePS514508.097656678IPR001611Leucine-rich repeat
PROSITE profilePS514505.363680701IPR001611Leucine-rich repeat
PROSITE profilePS514505.956704726IPR001611Leucine-rich repeat
PfamPF005601.2704722IPR001611Leucine-rich repeat
SMARTSM004016.0E-79931047IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.9349931029IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-109951048IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.76E-99971041No hitNo description
CDDcd002025.92E-89981059No hitNo description
PfamPF003201.1E-119991030IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.16311681204IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-1611681222IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-1311681228No hitNo description
Gene3DG3DSA:3.30.50.102.1E-1311721205IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.22E-1211731220No hitNo description
PfamPF003201.7E-1511741208IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1264 aa     Download sequence    Send to blast
MMTLFLQNHL AISSSYDENA THLSPKMQKL ALFQFKLSFT INSSTAEFCE DAPSVSKTMN  60
WSMSSDCCTW DGVTCDHMTG NVIGLDLRCS HLEGSIRPDS TLFNLSFLQN IIFDSNSLHG  120
ELPLEIFHLP NLEVLSLEFN SQLIVKLPKH KWGSSSNLQL LALTQTTLSG GIPDSIGYLK  180
SLTFLSIFQC NLSGPIPRSI SNLTQLTYLN LGFNLLSGQI PDSLANIQNL GILYLNNNNF  240
SGPIPRSIGN LTQLLLLDLD SNYLTGQIPR SVGNLTQLTL LQLSSNYLTD RIPDSLASLQ  300
NLQLLSLGRN NLIGPSPSWI SNCRELSFLD LSENSLTGPL PSNLILPNLT FLDLSHNSLN  360
GTIPSWFFHS PLLTYISIDH NEFTGQVYVF GSLEMYSLKY LSLSHNNLTG GLEHLPWKIL  420
TYLDLQSNML QGSLPASICN SSSLDILNLS HNNLTGVLPS CTRGLNYSLS VFDLRMNSIE  480
GSLPSALVNF RKLRSLNLHG NKLEGTIPLS FSKFDYLEVF DVGNNQINDT FPLWLETLQN  540
LQVLILKSNK FFGIITNVSK IEHPFPSLRI IDLSNNEFSG PLPAKYIQNF KGMMNKDANK  600
MERTYMGNSL YSDTMMLVVK GVEIEFIRIL TIFTAIDLSR NKFEGEIPEY IGNLESLRYL  660
NLSHNNLTGH IPSLVGKLLM LESLDLSFNL LVGVIPQELT SIYSLSHLNL SQNDLTGHIP  720
RGPQFSTFEN SSYAGNFGLC GPPLSRRCIR ETQQEEFEDD EDDGFFFSGF TWESVAIGYG  780
CGVVVGFVVG YVMFMAGKPK WAGGYWDRFV NGDDSFHNLI NVLDFPLESV EEDKGITDNS  840
DPQFQRPGLF NSDVSQGLPP LFNSDIAEHD NYVQDNSDTK QLPVATDISN THLPLDSSHL  900
TNPTSFQTQS SYYVVESSSS CSAEKNFLPY PELLVPVKPR TKILRSSTFS RWHLLSLSKS  960
PKKISKSKGK KKMKKLSQLP NESEFSENCI HQHMSSKRCA HCQADKTLQW RDGPMGPKTL  1020
CDACGVSYKS GCLVRGSRPI ASHRSKTKKF SRSQGKEKKT KLSGDIKDDS TNQLQEDFTN  1080
PLSYKICTLC NVKGNLPWKD GPVSPSSLCI ACGDRYRSGH LLQETHPIAS QDPEKNGKMN  1140
TRNRKKKRKE LPGLPNDSQP LGVAGHQNGP GKRCAHCQVM RTPQWRDGPN GPKSLCNACG  1200
VRYRSGRLLP EYRPAASPTF VPSLHSNIHK TVIKMREKPI PKIIMPENDP AITAPPETVP  1260
ASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mna_A4e-876875137652LRR receptor-like serine/threonine-protein kinase FLS2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111431149RKKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247323.10.0PREDICTED: receptor-like protein 12
TrEMBLA0A162A8P20.0A0A162A8P2_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-31GATA transcription factor 11