PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015187
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 336aa    MW: 38037 Da    PI: 5.483
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015187genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.8e-102980653
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRa 53
                  f+++q+ +Le++F+ n+ ps+ +r  + ++     +L+ +q+  WF NrR+
  DCAR_015187 29 MFSSDQVMVLEQFFAVNQVPSHVMRLAMIHENsvlsNLDSQQIEAWFENRRT 80
                 699*******************99999888878899***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00432489IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-92980IPR009057Homeodomain-like
PfamPF000462.5E-72980IPR001356Homeobox domain
SuperFamilySSF466899.41E-92980IPR009057Homeodomain-like
PROSITE profilePS5007111.583085IPR001356Homeobox domain
CDDcd000861.39E-63079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEMKGNHGSG NSTTCNVDIQ ETLGDKIMMF SSDQVMVLEQ FFAVNQVPSH VMRLAMIHEN  60
SVLSNLDSQQ IEAWFENRRT LENSKMIAMR QLLMLEKSFL NDTVEQLSRQ RLYLFRMLRF  120
ASTETYPAPG APRSVSENLM VEARRELLLL ENELLHGEFL EGTSEIFVKT SLDWTYFPVN  180
GIIVDASVML SFVKAAMIPD GTLNPFLRQH QEFVVFCSVK DIKLDQIFFK DGEKSSTAIV  240
PALLPLEIKL KQTSLKEEDM LTAAASSFLP QDIKLEKIAF KDREESLTAV SSAFLPQRFG  300
VAMGRYCVLG TWRYVPNGPA ASGEVKFMLR FKFIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244886.10.0PREDICTED: uncharacterized protein LOC108216594
RefseqXP_017244887.10.0PREDICTED: uncharacterized protein LOC108216594
RefseqXP_017244888.10.0PREDICTED: uncharacterized protein LOC108216594
RefseqXP_017244889.10.0PREDICTED: uncharacterized protein LOC108216594
TrEMBLA0A165WJX80.0A0A165WJX8_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.16e-12HD-ZIP family protein