PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014788
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 592aa    MW: 65644.2 Da    PI: 6.3966
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014788genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23110212199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd+++ g +++p+ +a+++         ++ +   l ++d +g  We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF++++ +++e
  DCAR_014788 110 FSKILTPSDANNGGGFSVPRFCADSIfpalnfeADPPVQ--NLGVRDVHGVLWEFRHIYRGTPRRHLLTTGWSKFVNNKKLVAGDSVVFMRNR-RSGE 204
                  88*********************999*****96555555..6************************************************655.8888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                    v+++r+
  DCAR_014788 205 ISVGIRRA 212
                  9****996 PP
2Auxin_resp68.52.2e-23251317166
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgv 66 
                  aa+ a+++  Fe+vY+P a++++Fvvk+ekve++++v ++vGmR+kma+etedss+ ++ +Gtv++ 
  DCAR_014788 251 AAELAAKGLGFEIVYYPGAGSADFVVKAEKVERSFSVFWTVGMRVKMAVETEDSSRMTWfQGTVSSA 317
                  678899999*******************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-32103215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-29103217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-21109211No hitNo description
PROSITE profilePS5086312.619110213IPR003340B3 DNA binding domain
SMARTSM010192.1E-19110213IPR003340B3 DNA binding domain
PfamPF023621.2E-21110212IPR003340B3 DNA binding domain
PfamPF065073.5E-20251317IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MATNRQLLKV EPAIWRACAG TSVHIPAVNS RVYYFPQGHS EQSASTPTFS PLVFARPYTL  60
CCVRGVGFFA NPETDEVFAK MHLVPVPSDQ SVLLRNEQGD VEDENDVVSF SKILTPSDAN  120
NGGGFSVPRF CADSIFPALN FEADPPVQNL GVRDVHGVLW EFRHIYRGTP RRHLLTTGWS  180
KFVNNKKLVA GDSVVFMRNR RSGEISVGIR RAVKANADCN GRWNYYEDKR EREGFSRDVR  240
GRVAVEAVEE AAELAAKGLG FEIVYYPGAG SADFVVKAEK VERSFSVFWT VGMRVKMAVE  300
TEDSSRMTWF QGTVSSAVLP DIVFIVAILI FHCLFTIPSR VICANYTQFA QVTWDEPEAL  360
QNVKRVSPWQ VENVVATPSL HSEFHPTKKC KLSQDPGLLS AGDGELLFPM PFLSHSLMGH  420
LNPSWMNYNS FPAGIQGARQ DQICVSGVPN NILENSQQIC SKFFVGDMSP MAETTELNIG  480
SAQVDNLSPD SRSSVHFFGN EQVGKQRVSK CSQKVGISSF QLFGKIIHIN NPIEGGLDDV  540
KCTGEDGSKI YREGRVDHPL KRSLTYPFTE FFGTVDVQCQ RDSASEDVYS E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-601438355395Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244861.10.0PREDICTED: auxin response factor 17-like
TrEMBLA0A162AA990.0A0A162AA99_DAUCS; Auxin response factor
STRINGcassava4.1_004122m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-153auxin response factor 17