PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014493
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 674aa    MW: 74447 Da    PI: 5.0653
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014493genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.82.6e-1323086721374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAea +++d  la +++ +l+  ++p gd+mqR+a++fteAL+arl+   + + +++  +p +  + +s+e l++++++++++P++kf+h+
  DCAR_014493 308 LVHLLLACAEATAKEDYMLAGRYVHHLNRVVTPLGDSMQRVASCFTEALSARLNAtlTAKPTSSNSKPFTPFPPDSIEILKIYQILYQACPYIKFAHF 405
                  68****************************************************944444555555555555667*********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+e+rvH+iD+di qG QWpa++qaLa+Rp+gpp lRiTgvg     s e++ etg+ L+++A++l+vpfef++ v ++ledl+++++
  DCAR_014493 406 TANQAIFEAFESEQRVHVIDLDILQGYQWPAFMQALAARPGGPPFLRITGVGT----SPEAVMETGRCLSELAHSLRVPFEFHP-VGEQLEDLKPHMF 498
                  *****************************************************....9**************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn+v +l+r++    sl     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p +s +r+kvE+ ++++
  DCAR_014493 499 NRRVGEALAVNSVNRLQRVP--GNSLG----NLLTMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPLDSAHRVKVEQCIFAP 590
                  *******************9..44555....5****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vaceg+er++rhe+lekWr+ +e+ GFk vplse+a++q + ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  DCAR_014493 591 EIQNIVACEGSERVMRHEKLEKWRMIMESKGFKGVPLSENAVTQSNILLGLYSCDGYRLTEDHGCLLLGWQDRAILAASAWR 672
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.879282652IPR005202Transcription factor GRAS
PfamPF035149.1E-130308672IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MESLKSESCS KLLSNSSSTS SVLEASKKDP LLSDSEKKSL TPSVSSLNFD ALKFDVLDGE  60
MEVQSPDNSA LWQSFFTDQL DGGDFMISSP VRNLPSPQGT NFGNYHSNYV QSMHGQSLLG  120
YSSPPRALSP LGPFSSIHNN SSKVKGMSPL HRVLNSPNNQ EFMQVESFSL PALENFLDDY  180
DREEDFGTLK GFGAGGGSYD EALTTVPALL ECLTQPNNST RFSGSESTVL GGNSQGSDGL  240
YQKKSMVANP PLLQQLEEER EQEKKQLQQQ APPQRAQDLQ QAQIIDHTLM VPPLSFAPEQ  300
EQESGLQLVH LLLACAEATA KEDYMLAGRY VHHLNRVVTP LGDSMQRVAS CFTEALSARL  360
NATLTAKPTS SNSKPFTPFP PDSIEILKIY QILYQACPYI KFAHFTANQA IFEAFESEQR  420
VHVIDLDILQ GYQWPAFMQA LAARPGGPPF LRITGVGTSP EAVMETGRCL SELAHSLRVP  480
FEFHPVGEQL EDLKPHMFNR RVGEALAVNS VNRLQRVPGN SLGNLLTMIR DQAPNIVTIV  540
EQEASHNGPY FLGRFLEALH YYSAIFDSLD ATFPLDSAHR VKVEQCIFAP EIQNIVACEG  600
SERVMRHEKL EKWRMIMESK GFKGVPLSEN AVTQSNILLG LYSCDGYRLT EDHGCLLLGW  660
QDRAILAASA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-972926712377Protein SCARECROW
5b3h_D1e-972926712377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245655.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A165XGL10.0A0A165XGL1_DAUCS; Uncharacterized protein
STRINGXP_009803754.10.0(Nicotiana sylvestris)
STRINGXP_009613034.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-101RGA-like 2
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]