PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_014278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ARF | ||||||||
Protein Properties | Length: 520aa MW: 56744 Da PI: 4.8465 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.7 | 2.9e-25 | 107 | 208 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +kvltpsd+++ g +++pk++ae+ ++ + tl+++d g +We+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+ ++r +++ DCAR_014278 107 VKVLTPSDANNGGGFSVPKSCAETVfppldfaADPPVQ--TLMVKDVLGAVWEFRHIYRGTPRRHLLTTGWSKFVNAKKLVAGDSVVFMQSKR-SQQN 201 699*******************999*****96555555..8************************************************6665.5556 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ DCAR_014278 202 FVGIRRA 208 9999986 PP | |||||||
2 | Auxin_resp | 65 | 2.7e-22 | 243 | 322 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++a ++ Fe+vY+P+ s++vv++e+ve+a+ v +++G+R+kma+eted s+ ++ +Gtv+ ++++ +S+W++L+ DCAR_014278 243 EKAVKGLGFEIVYYPKIDVSDYVVQAERVESATFgVDWMIGTRVKMAMETEDLSRMTYiQGTVSKIHQVGG---VQSPWKMLQ 322 66777889**********************99877***********************9*********555...89*****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.97E-28 | 97 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-36 | 101 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-21 | 105 | 207 | No hit | No description |
PROSITE profile | PS50863 | 12.351 | 106 | 209 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-19 | 106 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-23 | 107 | 208 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.9E-18 | 243 | 322 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MAAQSEFRPV DPTVWRACAG NFVHVPAVGS RAYYFPQGHA NAINTSASLI QSQPFVVCRV 60 LGVDYLADME TDEILAKIQL FPVESESAES TQSESPELTQ PEFASVVKVL TPSDANNGGG 120 FSVPKSCAET VFPPLDFAAD PPVQTLMVKD VLGAVWEFRH IYRGTPRRHL LTTGWSKFVN 180 AKKLVAGDSV VFMQSKRSQQ NFVGIRRAAK AKNVASTSRW NYLDLKEGEE DKSAENAVKQ 240 VMEKAVKGLG FEIVYYPKID VSDYVVQAER VESATFGVDW MIGTRVKMAM ETEDLSRMTY 300 IQGTVSKIHQ VGGVQSPWKM LQVTWDDPEV VKNVMNVSPW QVECVSLLEQ SEVPAAKRSK 360 LSVDAGSPLH REGAVIPGDG EIFEDAGLLP GRDGELFPVT RSSSSVAEPF NADLNPLLMN 420 AGSYPGGIQG ARQDHICVSG ISNFFHENTH QFDITFSVCN RSPVTEAVYT EGDTVSSSSA 480 DPPKEIQFFD NEAVGTQGCS DSPKVGINSF QLFGQIIHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-64 | 10 | 351 | 51 | 396 | Auxin response factor 5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245681.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
TrEMBL | A0A162ABF0 | 0.0 | A0A162ABF0_DAUCS; Auxin response factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-113 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_014278 |