PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014200
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 312aa    MW: 35111.6 Da    PI: 4.5014
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014200genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1956109356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  DCAR_014200  56 KKRRLSVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 109
                  456899***********************************************9 PP
2HD-ZIP_I/II1322.3e-4255147193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE++Fe ++kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ ++L++++e+L +e+ke
  DCAR_014200  55 EKKRRLSVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKHNYDTLQHDNESLLKEIKE 147
                  69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-1949113IPR009057Homeodomain-like
PROSITE profilePS5007117.52451111IPR001356Homeobox domain
SMARTSM003893.8E-1854115IPR001356Homeobox domain
PfamPF000462.7E-1656109IPR001356Homeobox domain
CDDcd000867.39E-1856112No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2058118IPR009057Homeodomain-like
PRINTSPR000318.7E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000318.7E-691107IPR000047Helix-turn-helix motif
PfamPF021831.5E-18111151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKRLSSSDSL GALMSLCPTT EEHSPGNNHM YGRDFQSSLD GLDEEGCIEE SGQIEKKRRL  60
SVDQVKALEK NFEVDNKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYGVL  120
KANYDSLKHN YDTLQHDNES LLKEIKELKA KYGEKNEGNP VKEEVMASEN KDMYEEILVT  180
NKSLAAIDSI AQCDDPTAEP NLVASAVTTF FQDGSSDSDS SAILNEDNNN NSPNSSTAVF  240
GHQFMPSSSS NCFQFSSASD SKTILGDAQK AYQPQFVKIE EHDFFSGDES CNFFSDDQAP  300
SLQWYCHDQW N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248050.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6
TrEMBLA0A165XRH00.0A0A165XRH0_DAUCS; Uncharacterized protein
STRINGVIT_07s0191g00180.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-72homeobox protein 16