PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013939
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 448aa    MW: 50056.4 Da    PI: 7.69
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013939genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52211521128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  +ppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+   
  DCAR_013939  21 MPPGFRFHPTDEELITFYLASKVYNGSFCG-VDIAEVDLNRCEPWELPDIAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSSsan 117
                  79*************************877.34***************8788899***************************************8776 PP

          NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +l g+kktLvfykgrap+gekt+Wvmheyrl
  DCAR_013939 118 ggAATLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 152
                  554555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6116174IPR003441NAC domain
PROSITE profilePS5100558.10821174IPR003441NAC domain
PfamPF023651.5E-2722152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MLAIEEILCE LNGSEMNEQG MPPGFRFHPT DEELITFYLA SKVYNGSFCG VDIAEVDLNR  60
CEPWELPDIA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSSSANGGA  120
ATLLGMKKTL VFYKGRAPRG EKTKWVMHEY RLDGDFSCRH TCKEEWVICR IFQKIGEKKN  180
GGLLQGQSSS SSYMQEASNS SLSRLFDQSL KSGSALSLQP YHTLQSLQNQ NQNRSQVLIN  240
NIPHEADLKS LITNSSSSSL AVSQASPFPV NNELNGLQTS CSPPKTKMKQ DHNLLKTLLP  300
HQDYYCPKEQ EEAPFPKICK TESNFSHFQS PHFSTHPHIP NFRFPISTTA EYDMNLAHQI  360
TNTPNYKQSP LLFRSLDSDT KNVMGNNCGV GLGSCGFPAY GTGDTEMSTS SSSCSRGLPF  420
SRAGFKQMLL LDPPTKMSAG ESWPFHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-491617412165NO APICAL MERISTEM PROTEIN
1ut4_B8e-491617412165NO APICAL MERISTEM PROTEIN
1ut7_A8e-491617412165NO APICAL MERISTEM PROTEIN
1ut7_B8e-491617412165NO APICAL MERISTEM PROTEIN
4dul_A8e-491617412165NAC domain-containing protein 19
4dul_B8e-491617412165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245234.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-104NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A165XZE00.0A0A165XZE0_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s00730.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-104NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]