PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 249aa MW: 27266.7 Da PI: 7.9004 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 37 | 91 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl DCAR_013521 37 KQRLRWTSDLHDRFVDAIAQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 91 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.25 | 34 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-32 | 35 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 36 | 91 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-26 | 37 | 92 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-8 | 39 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-24 | 124 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGLVPYKAQG SEQISPVAAV GGPPVETSPP PAGANAKQRL RWTSDLHDRF VDAIAQLGGP 60 DRATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPESPA DGSKEDKKIS GDSLDSMDSP 120 PGLQINEALR MQMEVQKRLH EQLEVQRQLQ MRIEAQGKYL QKIIEEQQKL GSSLVGTESQ 180 PGGEDKQFQS YSHQATDASV QPLSPRKKQK VINEGPDGSA PSLAAPEIGN HWDPKWYNND 240 SQFRGPMD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-22 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-22 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-22 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-22 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017243654.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
Swissprot | Q9SJW0 | 5e-74 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A165YIT3 | 0.0 | A0A165YIT3_DAUCS; Uncharacterized protein | ||||
STRING | XP_008240600.1 | 1e-107 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2796 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-76 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013521 |