PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 24108.2 Da PI: 8.3108 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.9 | 2.6e-12 | 1 | 28 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfy+grapkgek++Wvmheyrle DCAR_013122 1 MKKTLVFYRGRAPKGEKSNWVMHEYRLE 28 8*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 6.6E-5 | 1 | 27 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.307 | 1 | 52 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-15 | 1 | 52 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MKKTLVFYRG RAPKGEKSNW VMHEYRLEGK FAYHYLSRTS KDEWVISRVF QKTIPGATFP 60 GGKKRLNTTS TNYPELSSSS SVSLPPLLDT LPYNATATSD LDSCSFDGSA STAATKEHVP 120 CFSTSASPSC FNKYSSMFHS VSPAAAMVDP AAAMPPSSLA AFQSNVGVSA FPSLRSLQEN 180 MQLPFFFSPV APSPVFGGGE VGNWPAPDTQ KSGATELDCI WSF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847231 | 3e-39 | KC847231.1 Gossypium hirsutum NAC domain protein NAC54 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017246146.1 | 1e-162 | PREDICTED: protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A165Z1X4 | 1e-163 | A0A165Z1X4_DAUCS; Uncharacterized protein | ||||
STRING | GLYMA13G34950.1 | 2e-66 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 2e-30 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013122 |