PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012829
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30719.9 Da    PI: 10.0084
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012829genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18117171256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q  +Le+ F+++ +++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  DCAR_012829 117 RKKLRLSKQQALVLEDNFREHITLNPKQKQALAEQLNLSARQVEVWFQNRRARTK 171
                  678899***********************************************98 PP
2HD-ZIP_I/II113.11.8e-36117207192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlsk+q+ +LE++F+e+ +L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e Lk+ +++l++en++L++ev+eL+ +lk
  DCAR_012829 117 RKKLRLSKQQALVLEDNFREHITLNPKQKQALAEQLNLSARQVEVWFQNRRARTKLKQTEVDCELLKKFCETLTDENRKLQREVQELK-ALK 207
                  69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-1797171IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1899174IPR009057Homeodomain-like
PROSITE profilePS5007116.779113173IPR001356Homeobox domain
SMARTSM003898.4E-14115177IPR001356Homeobox domain
PfamPF000468.4E-16117171IPR001356Homeobox domain
CDDcd000865.39E-12117174No hitNo description
PROSITE patternPS000270148171IPR017970Homeobox, conserved site
SMARTSM003403.8E-22173216IPR003106Leucine zipper, homeobox-associated
PfamPF021837.5E-9173207IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAFEDPRSTS LTLSLFSHLE PPQKQYSQLD QLTNLSLALS SDASKVHAVF KPDMILNRQA  60
SSISVVSSGS SGVKRTRDVS WEEVRIKKVS QMKRNVSSMS HSEEGDDQEI EEEGGVRKKL  120
RLSKQQALVL EDNFREHITL NPKQKQALAE QLNLSARQVE VWFQNRRART KLKQTEVDCE  180
LLKKFCETLT DENRKLQREV QELKALKRAA PPYYKAQLPA ATLRICPSCE KLRDQPAIRH  240
HQASSKPQFS INSTKKQFYG LLSNHSSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165173RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246253.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-63HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A165ZAN60.0A0A165ZAN6_DAUCS; Uncharacterized protein
STRINGcassava4.1_013986m2e-66(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-60HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]