PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012760
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 512aa    MW: 57120.1 Da    PI: 8.935
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012760genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-128683599
                 EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 t++le +sg  W   l   k+++   + +GW++Fv+++ L++gD+++F ++g+ +f  vv+vf++
  DCAR_012760  8 TVSLEGPSGDFWHASL--IKHDNDLCIYEGWQSFVRDHFLEDGDTLLFGYEGDLQF--VVQVFDQ 68
                 89**************..9*******************************998777..*****97 PP
2B352.31e-16192286198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f kv+++ +v+ s  l +p +f  +h   ++++++l+l++e+g+sW ++ i  ++ + ++++ +GW +Fv++n ++ gD+++F+l+++ ef  +v+++
  DCAR_012760 192 FTKVMKRFNVSGSYTLNIPYQFSMAHL--PKCKVQLILRNEDGKSWVINSIPnTRVQTSHTFCGGWLSFVRDNTINMGDICIFELVQNCEF--LVRIL 285
                  889999999*************98995..459999***************7744445559***************************9999..99998 PP

                  - CS
           B3  98 r 98 
                  r
  DCAR_012760 286 R 286
                  8 PP
3B342.89.5e-143954781096
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   + s  + +p kf  eh   + + ++++l++ +g  W+v+   + k ++ +++ +GW  Fv++n+++ gD+++F+l+g+ e   +v++
  DCAR_012760 395 ISGSFTMKVPCKFSMEHL--PSCRTEIVLRNIKGDCWTVNSVPTMKVQTlHTFCGGWMAFVRDNDIQMGDICIFELIGKCEM--RVHI 478
                  555677889999998885..45889****************7777777789999***********************95444..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.746169IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-15474IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.51569IPR003340B3 DNA binding domain
CDDcd100173.57E-12667No hitNo description
PfamPF023626.6E-10768IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-14771IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-22185286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-23189287IPR015300DNA-binding pseudobarrel domain
CDDcd100177.58E-21190286No hitNo description
PROSITE profilePS5086313.747192288IPR003340B3 DNA binding domain
PfamPF023622.2E-14192286IPR003340B3 DNA binding domain
SMARTSM010195.4E-16192288IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-23381480IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-21381479IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-20384478No hitNo description
PfamPF023629.7E-11386478IPR003340B3 DNA binding domain
SMARTSM010191.3E-10386482IPR003340B3 DNA binding domain
PROSITE profilePS5086312.153386482IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MEGYTCGTVS LEGPSGDFWH ASLIKHDNDL CIYEGWQSFV RDHFLEDGDT LLFGYEGDLQ  60
FVVQVFDQSS CEKEAASTAR CSQDQSKCNN LNAKKRESVE NTVGYPRKKM RSSQVPSDIA  120
VKERRLQGIV ASMGMTSETS RLSTLAEYVS GPSKNSVAVA GPSGKNSVNH ALLSATEADR  180
IAQAFTSLYP TFTKVMKRFN VSGSYTLNIP YQFSMAHLPK CKVQLILRNE DGKSWVINSI  240
PNTRVQTSHT FCGGWLSFVR DNTINMGDIC IFELVQNCEF LVRILRVQTE GVDNHSNKSV  300
CKMTNNSCAT QKTPGYMTTS KGNSRESHAK PKSKAEKSGC NKNQGSNRRK NKQLQQSPQI  360
RSFMSMKSAP EEKIAAESFL SNLPHFVRIM KKFNISGSFT MKVPCKFSME HLPSCRTEIV  420
LRNIKGDCWT VNSVPTMKVQ TLHTFCGGWM AFVRDNDIQM GDICIFELIG KCEMRVHISS  480
YGRKDQEYQG GRVASNELAL MVNSRPLLQG T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243495.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A165ZCQ10.0A0A165ZCQ1_DAUCS; Uncharacterized protein
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-17B3 family protein