PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012684
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 479aa    MW: 52996 Da    PI: 8.781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012684genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09312359455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++ +L +l+P +    +k   Ka +L + ++Y++sLq
  DCAR_012684 312 SHSLAERVRREKISKRMKTLEDLVPGC----NKVTGKALMLDEIINYVQSLQ 359
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.33E-9306363No hitNo description
SuperFamilySSF474592.49E-16306377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16308376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6312359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9314364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MENEYFFNNG ISSPQNQFQT SPTQLQMTNT SQIPNFRKTT EQYSQFEANL SSLVSSPVTN  60
NAYNTPLNHF VKEDFSVSRS SMYMSPVLPA LPTDPGFAER AAKFSCFGSK SFNGRTSQTG  120
LNNAEFQYRS SGIVLGNSKL PRVSSSPSLQ ALGSHMGIQE NKNASQLQMD MRPSVNASDL  180
DTKISNLSCS GANSNEESSV SAQNTSVENV FSTPMGLNSR KRKGFSKEKG KEALSTQGKN  240
AAKEAGGDEV SNVNRSKMKK CNANKNDDVK LKEEKGDSSD EDDKQIYNGK KPLEPFKDYI  300
HVRARRGQAT DSHSLAERVR REKISKRMKT LEDLVPGCNK VTGKALMLDE IINYVQSLQR  360
QVEFLSMKLA TVNPRLDINM GSLLSKNTIQ PSDTIPHQSY QFNSPSSAYY SHHQSHQIPQ  420
VHKTPEPIDP AFSRNPGMQI DGHGEGLSQF LSFSEDDLQS IVQMGFATNQ TPHMKLEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238394.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A169WJ590.0A0A169WJ59_DAUCS; Uncharacterized protein
STRINGXP_007140690.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-80bHLH family protein