PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012515
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 301aa    MW: 32129 Da    PI: 5.0682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012515genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.8e-10148192554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  DCAR_012515 148 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 192
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15141202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-15145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7148192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSNNAGDAGA GDDFLEQILG FPVYAGADTN LAGNEVPMML QLNSGDRGGG NIPGGDVGGG  60
GFEFPLGLSL EQGKGSGEYF KMDHEEVEAS GSGKRFRVDE VVVDSRGSHA NRTGFQGQPI  120
HNAVPAMSHP PAVRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV PSVNKTDRAA  180
MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLFADTPIS SLEEEGTEGG GNQPAWEKWS  240
NDGTEQQVAK LMDENVGAAM QFLQSKALCI MPISLATAIY HTQPPDSTTS HVKPETNPQL  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242262.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-108UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A166CGU70.0A0A166CGU7_DAUCS; Uncharacterized protein
STRINGMigut.D00370.1.p1e-134(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.25e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]