PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012342

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 575aa MW: 65164.7 Da PI: 8.0524

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012342	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	280	6.9e-86	201	572	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 l +lLl+ Ae v ++++ +a++lL + + ++ +g p++R++ +f +AL++r++ ++ + +++ ++ + ++++ s + + +++++ P+ ++ ++ DCAR_012342 201 LAHLLLDSAEKVGNKQFDAANKLLLHSEGKVTDSGHPVERITYHFSKALRERITAETRTSVNQRETDQGRDYSglFSGVENTCLVLHQAVPFSQVMQF 298 579**************************************************666666666666666666542333333344********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 + q+Ile v++ +++H iD+++ G+QW++L+qaL++R+ + l++T+++ ++ke+ e++g+rL+++A++l++ f f+++ +++dl++e DCAR_012342 299 ASIQMILEHVATRKKIHLIDLQLRIGVQWAPLIQALSEREtFPVQLLKLTALQT---TDKEKAENIGKRLQDYAKSLNICFIFKAVSIVNMKDLKVEL 393 ************************************4455699**9...68**********************9999***** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 ++++pgEa++V + + l + ++ +l+ +L+++++++Pk++vv e ea+hns+sF++rf+eal ++sa fd+le + r+++ r+++Er ++g DCAR_012342 394 FNIRPGEAVVVYSPIVLRAMIPKPENLQI----LLRVIQRMRPKIMVVNEVEANHNSPSFVNRFTEALFFFSAWFDALEDCIDRDNQYRMNIERSYFG 487 *****************88888888....************************************************************* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r i+n++a+eg+ r+ r+ t++ Wr ++++ + ++ +s+ +qa+l+l+k ++ ++ ++ ++l+ gWk+ pL svSaW+ DCAR_012342 488 RGIQNILATEGEGRIIRCVTMNVWRVFFQRFKMVEIDISKASINQANLVLEKKFccGNSCNIYKNGKCLIVGWKGTPLHSVSAWK 572 **********************************************9865356778999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.076	175	550	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-83	201	572	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MADDFSLFSV FDSQDVHKPL EGLLNDMLVT QQTQVSSFGS DIPGGVDHST TGIRSGRHPI 60 IIEEPRVHPS GDQEKCIFSN SNVSTIPEPD QLILKGQKYE QSSKDSDFIH LMPHKNCTES 120 FRVLGNYGKG KERCREDIFS GHSSKNTVTD HKLTTEEIMR VAGERFIHFS NKRFDGITSF 180 IHPDGSALSC LSSEDTRMVD LAHLLLDSAE KVGNKQFDAA NKLLLHSEGK VTDSGHPVER 240 ITYHFSKALR ERITAETRTS VNQRETDQGR DYSGLFSGVE NTCLVLHQAV PFSQVMQFAS 300 IQMILEHVAT RKKIHLIDLQ LRIGVQWAPL IQALSERETF PVQLLKLTAL QTTDKEKAEN 360 IGKRLQDYAK SLNICFIFKA VSIVNMKDLK VELFNIRPGE AVVVYSPIVL RAMIPKPENL 420 QILLRVIQRM RPKIMVVNEV EANHNSPSFV NRFTEALFFF SAWFDALEDC IDRDNQYRMN 480 IERSYFGRGI QNILATEGEG RIIRCVTMNV WRVFFQRFKM VEIDISKASI NQANLVLEKK 540 FCCGNSCNIY KNGKCLIVGW KGTPLHSVSA WKFK*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MADDFSLFSV FDSQDVHKPL EGLLNDMLVT QQTQVSSFGS DIPGGVDHST TGIRSGRHPI  60
IIEEPRVHPS GDQEKCIFSN SNVSTIPEPD QLILKGQKYE QSSKDSDFIH LMPHKNCTES  120
FRVLGNYGKG KERCREDIFS GHSSKNTVTD HKLTTEEIMR VAGERFIHFS NKRFDGITSF  180
IHPDGSALSC LSSEDTRMVD LAHLLLDSAE KVGNKQFDAA NKLLLHSEGK VTDSGHPVER  240
ITYHFSKALR ERITAETRTS VNQRETDQGR DYSGLFSGVE NTCLVLHQAV PFSQVMQFAS  300
IQMILEHVAT RKKIHLIDLQ LRIGVQWAPL IQALSERETF PVQLLKLTAL QTTDKEKAEN  360
IGKRLQDYAK SLNICFIFKA VSIVNMKDLK VELFNIRPGE AVVVYSPIVL RAMIPKPENL  420
QILLRVIQRM RPKIMVVNEV EANHNSPSFV NRFTEALFFF SAWFDALEDC IDRDNQYRMN  480
IERSYFGRGI QNILATEGEG RIIRCVTMNV WRVFFQRFKM VEIDISKASI NQANLVLEKK  540
FCCGNSCNIY KNGKCLIVGW KGTPLHSVSA WKFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-33	229	572	31	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ150142	1e-147	FJ150142.1 Daucus carota subsp. sativus clone BAC C107M02 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240061.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A166CCJ5	0.0	A0A166CCJ5_DAUCS; Uncharacterized protein
STRING	XP_009346627.1	1e-153	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4694	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-56	RGA-like 1

Link Out ? help Back to Top
Phytozome	DCAR_012342