PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 576aa MW: 65324.4 Da PI: 6.6335 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 276.9 | 6.3e-85 | 195 | 567 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfsh 95 l +lLl++A+ + +g++ a++lL++ as++g+p++Rla+y+ eAL++r++r ++s+ + + ++ +++n ++ +++ + P+ k h DCAR_012341 195 LAHLLLAAADKILDGNFDSARRLLTNCDCKASKSGNPIERLASYISEALQERIHReKGSRKIGIASEKDRAPNNGLSTGLDQTVlaAHMKIPFSKALH 292 579****************************************************767777777777777778844444444442244558******* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 ++ q+Ile v +e+ +HiiD+ i G++Wp+++qaL++R+ ++ l+iT+++ ++k+++e +g+rL++fA++l++pf+f+v+++++++ l+ e DCAR_012341 293 FASTQTILEHVTTETSIHIIDLHIRSGIHWPPMIQALSERKvHQVQLLKITALDT---EDKQKVEDIGKRLESFADSLKIPFSFDVVTVDDMSYLRKE 387 *****************************************777789*******9...58************************************** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +++++gEa+++ l ++ ++ +le +++++++l+P ++++ e +a+ ns+sF +rf+++l +ys+ fd+le l r+++ r+++E+ ++ DCAR_012341 388 LFDIQSGEAVVIFAPTLLRTMIPRPDKLET----LMRVIRELNPLIMIIYEVDANDNSTSFINRFVDSLFFYSTWFDCLEDCLDRDDQYRMNLEKYYF 481 ***************999999866555555....**************************************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 g i+n +a+eg+er+ r + Wr+ + ++ + +v++ + qa+++l+k ++ + ++ +s+++++gWk+ p++s+S W+ DCAR_012341 482 GSGIMNSIANEGEERITRSVKIDVWRSYFARFQMVEVEVPGSSFHQAEMVLKKeFScARFCTLSTDSKCFIIGWKGTPMFSLSTWK 567 *************************************************99862567777899**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.532 | 169 | 545 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-82 | 195 | 567 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MSDDFGLSSP NIIQTDNRPL EVLENDIYTR VEHISTSKVK EPSERNPLCS GIMHGINEGK 60 MEDKGLIVSE NGMNNRNKAI RAQHYVGAYG EQPSSRAPEV YFPVKNKADF NSASLFELLS 120 RYERGGKKLK DENLSNRSKI ATSDQKLTTE EIIRVAAERY IQFQNKDLEG ITTFIHPRGS 180 VLSSLSVEET RGANLAHLLL AAADKILDGN FDSARRLLTN CDCKASKSGN PIERLASYIS 240 EALQERIHRE KGSRKIGIAS EKDRAPNNGL STGLDQTVLA AHMKIPFSKA LHFASTQTIL 300 EHVTTETSIH IIDLHIRSGI HWPPMIQALS ERKVHQVQLL KITALDTEDK QKVEDIGKRL 360 ESFADSLKIP FSFDVVTVDD MSYLRKELFD IQSGEAVVIF APTLLRTMIP RPDKLETLMR 420 VIRELNPLIM IIYEVDANDN STSFINRFVD SLFFYSTWFD CLEDCLDRDD QYRMNLEKYY 480 FGSGIMNSIA NEGEERITRS VKIDVWRSYF ARFQMVEVEV PGSSFHQAEM VLKKEFSCAR 540 FCTLSTDSKC FIIGWKGTPM FSLSTWKFKQ APSYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-32 | 218 | 567 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240060.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A161WXY5 | 0.0 | A0A161WXY5_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-47 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012341 |