PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 576aa MW: 65423.3 Da PI: 4.9848 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 268.6 | 2e-82 | 195 | 567 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetsekn..sseelaalkl..fsevsPilk 92 l +lLl++A+ + +g++ a++lL+ + as++g+p++Rl++yf eAL++r+ r +++ k+l + ++ +++n s + +++ + P+ k DCAR_012340 195 LAHLLLAAADKFWDGEFDSARRLLTCCECKASKSGNPIERLTSYFSEALQERIRR-ETGTRKILmvSENDRAPNNglS--TGVDQTVlaTHMKIPFSK 289 579***************************************************9.5566666521333444444432..22222222245568**** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 h++ q+Ile v++e+++H+iD+ i G++W +L+q L++R+ ++ l+iT+++ ++k+++e +g+rL+++A++l+++f+f+v+++++++ l DCAR_012340 290 ALHFASTQTILEHVARETKIHVIDLHIRSGIHWSPLIQGLSERKvHPVQLLKITALDT---EDKQKVEDIGKRLESLADSLNITFSFDVVTVDDMSHL 384 ********************************************5566699******9...58*********************************** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 + e ++v++gEa++++ l ++ ++ +le+ +++++++lsP +++++e ea+ ns+sF +rf+eal +ys+ fd+le l r+++ r+++E+ DCAR_012340 385 KKELFDVQSGEAVVISAPTILRSMIPRPDKLEN----LMRVIRELSPLIMIISEVEANDNSPSFINRFVEALFFYSSWFDCLEDCLDRDNQYRMNLEK 478 ************************988888888....************************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++g i+n +a+eg+er+ r + Wr+ ++++ + +v++ ++ a+++l++ ++ + ++ ++ ++l++ Wk+ p++s+S W+ DCAR_012340 479 YYFGCGIMNSIATEGEERITRSVKIDVWRSYFSRFQMLEVQVPKSSFHLAEMVLEMeFScARFCTLSNDGKCLMIRWKGTPMFSLSTWK 567 ******************************************************9735566778999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.731 | 169 | 545 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.8E-80 | 195 | 567 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MSDDFGLPSS PIIQTDYRPP EVLENEFYTR VEQIPTSTVN EPSEKNPVCS DLGYGIYKGK 60 MTDTGLSVLE YDMENWNKAD TSEHYAGAYC EQPSSLAPEL DLPVQQKPDF SSATLFENLS 120 KYERAGKKLK DEQSSNLSEI ASVNQKLSTE EIIRAAAERY IQFPNKDPEC ITTFIHPHGS 180 VLSSLSKEES SGVDLAHLLL AAADKFWDGE FDSARRLLTC CECKASKSGN PIERLTSYFS 240 EALQERIRRE TGTRKILMVS ENDRAPNNGL STGVDQTVLA THMKIPFSKA LHFASTQTIL 300 EHVARETKIH VIDLHIRSGI HWSPLIQGLS ERKVHPVQLL KITALDTEDK QKVEDIGKRL 360 ESLADSLNIT FSFDVVTVDD MSHLKKELFD VQSGEAVVIS APTILRSMIP RPDKLENLMR 420 VIRELSPLIM IISEVEANDN SPSFINRFVE ALFFYSSWFD CLEDCLDRDN QYRMNLEKYY 480 FGCGIMNSIA TEGEERITRS VKIDVWRSYF SRFQMLEVQV PKSSFHLAEM VLEMEFSCAR 540 FCTLSNDGKC LMIRWKGTPM FSLSTWKFQQ PLIYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-33 | 218 | 567 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240059.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A166CCH9 | 0.0 | A0A166CCH9_DAUCS; Uncharacterized protein | ||||
STRING | VIT_07s0005g01500.t01 | 1e-145 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 4e-48 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012340 |