PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012339
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 584aa    MW: 66209.1 Da    PI: 9.5848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012339genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.42.9e-902105811374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfs 94 
                  l +lLl+ Ae v  +++e+a++lL + + ++s++g p++R+a++f +AL++r+  + ++ ++ l   + ++ +     ++   ++ ++++  P+ k+ 
  DCAR_012339 210 LAHLLLASAEKVGYKQFEAADKLLVHCEAMVSERGHPVERIAFHFSKALRERIKTEREHNFHNLGNDQGRSIRglptGVDI--ITAVLHQEVPFSKVM 305
                  579****************************************************99999999987777766666433333..44469********** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  +++  q+Ile ++ ++++H iDf++ +G+QW  L+qaL++R+  +   l+iT+++    ++ke++e +g++L+++A++++++f+f+v+ + +++dl++
  DCAR_012339 306 QFASIQMILENLSMAKKIHLIDFQLRNGVQWTLLIQALSERKtFPVKLLKITAIQT---SDKERTEDIGKKLQSYANSMNISFKFKVVSVLNMKDLKV 400
                  *****************************************94555699******9...58**************************9999******* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  e ++++pgEa+aV + + l+++  ++++l+     vLk++++l+P v++v+e ea++ns+ F++rf+eal +ysa fdsle  + r+++ r+ vEr +
  DCAR_012339 401 ELFDIRPGEAVAVYSPVVLMTMIGRPQNLHT----VLKVIQRLRPVVMIVMEVEANTNSPAFVNRFIEALFWYSAWFDSLEDCIDRDNQCRTEVERSY 494
                  ***********************87777777....*************************************************************** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +g+ i+n+va+eg++r+ r  + + Wr  ++++ + ++ +s+  ++qa+++l++ ++ +   ++ +++++l+  Wk+ pL svSaWr
  DCAR_012339 495 FGQGIKNIVAAEGEDRTTRSVKIGVWRTFFQRFKMVEIDISKASVDQANMVLKQkFScGSSCTISKNRKCLMVEWKGTPLHSVSAWR 581
                  **************************************************997615555669999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.9184559IPR005202Transcription factor GRAS
PfamPF035149.9E-88210581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MADDFSLNRV FDTRGFYKPP EDLLNEALMA QPKQMGVAIS EIDKPAGDDP STTVVRSGRH  60
PINVSDRGLH PSGDQQKLVF NHWMDIYLKS HNVNAMQLDQ SIPEGQNQEL RSGDIGSINL  120
KPNPVSKESF RVLGNYRNEK ALLREGILSN QNSNSRVSGK KLSTEDVIRL AGERFIHFSS  180
KKRDGFTNFT NPYDPALISL TVEDAKMVDL AHLLLASAEK VGYKQFEAAD KLLVHCEAMV  240
SERGHPVERI AFHFSKALRE RIKTEREHNF HNLGNDQGRS IRGLPTGVDI ITAVLHQEVP  300
FSKVMQFASI QMILENLSMA KKIHLIDFQL RNGVQWTLLI QALSERKTFP VKLLKITAIQ  360
TSDKERTEDI GKKLQSYANS MNISFKFKVV SVLNMKDLKV ELFDIRPGEA VAVYSPVVLM  420
TMIGRPQNLH TVLKVIQRLR PVVMIVMEVE ANTNSPAFVN RFIEALFWYS AWFDSLEDCI  480
DRDNQCRTEV ERSYFGQGIK NIVAAEGEDR TTRSVKIGVW RTFFQRFKMV EIDISKASVD  540
QANMVLKQKF SCGSSCTISK NRKCLMVEWK GTPLHSVSAW RFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3823358126375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240058.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A162AND00.0A0A162AND0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46941842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-61RGA-like 1