PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 584aa MW: 66209.1 Da PI: 9.5848 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 294.4 | 2.9e-90 | 210 | 581 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfs 94 l +lLl+ Ae v +++e+a++lL + + ++s++g p++R+a++f +AL++r+ + ++ ++ l + ++ + ++ ++ ++++ P+ k+ DCAR_012339 210 LAHLLLASAEKVGYKQFEAADKLLVHCEAMVSERGHPVERIAFHFSKALRERIKTEREHNFHNLGNDQGRSIRglptGVDI--ITAVLHQEVPFSKVM 305 579****************************************************99999999987777766666433333..44469********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 +++ q+Ile ++ ++++H iDf++ +G+QW L+qaL++R+ + l+iT+++ ++ke++e +g++L+++A++++++f+f+v+ + +++dl++ DCAR_012339 306 QFASIQMILENLSMAKKIHLIDFQLRNGVQWTLLIQALSERKtFPVKLLKITAIQT---SDKERTEDIGKKLQSYANSMNISFKFKVVSVLNMKDLKV 400 *****************************************94555699******9...58**************************9999******* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 e ++++pgEa+aV + + l+++ ++++l+ vLk++++l+P v++v+e ea++ns+ F++rf+eal +ysa fdsle + r+++ r+ vEr + DCAR_012339 401 ELFDIRPGEAVAVYSPVVLMTMIGRPQNLHT----VLKVIQRLRPVVMIVMEVEANTNSPAFVNRFIEALFWYSAWFDSLEDCIDRDNQCRTEVERSY 494 ***********************87777777....*************************************************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +g+ i+n+va+eg++r+ r + + Wr ++++ + ++ +s+ ++qa+++l++ ++ + ++ +++++l+ Wk+ pL svSaWr DCAR_012339 495 FGQGIKNIVAAEGEDRTTRSVKIGVWRTFFQRFKMVEIDISKASVDQANMVLKQkFScGSSCTISKNRKCLMVEWKGTPLHSVSAWR 581 **************************************************997615555669999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.9 | 184 | 559 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.9E-88 | 210 | 581 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MADDFSLNRV FDTRGFYKPP EDLLNEALMA QPKQMGVAIS EIDKPAGDDP STTVVRSGRH 60 PINVSDRGLH PSGDQQKLVF NHWMDIYLKS HNVNAMQLDQ SIPEGQNQEL RSGDIGSINL 120 KPNPVSKESF RVLGNYRNEK ALLREGILSN QNSNSRVSGK KLSTEDVIRL AGERFIHFSS 180 KKRDGFTNFT NPYDPALISL TVEDAKMVDL AHLLLASAEK VGYKQFEAAD KLLVHCEAMV 240 SERGHPVERI AFHFSKALRE RIKTEREHNF HNLGNDQGRS IRGLPTGVDI ITAVLHQEVP 300 FSKVMQFASI QMILENLSMA KKIHLIDFQL RNGVQWTLLI QALSERKTFP VKLLKITAIQ 360 TSDKERTEDI GKKLQSYANS MNISFKFKVV SVLNMKDLKV ELFDIRPGEA VAVYSPVVLM 420 TMIGRPQNLH TVLKVIQRLR PVVMIVMEVE ANTNSPAFVN RFIEALFWYS AWFDSLEDCI 480 DRDNQCRTEV ERSYFGQGIK NIVAAEGEDR TTRSVKIGVW RTFFQRFKMV EIDISKASVD 540 QANMVLKQKF SCGSSCTISK NRKCLMVEWK GTPLHSVSAW RFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-38 | 233 | 581 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240058.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A162AND0 | 0.0 | A0A162AND0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 6e-61 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012339 |