PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | YABBY | ||||||||
Protein Properties | Length: 156aa MW: 17739.1 Da PI: 9.6187 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 151 | 1.1e-46 | 2 | 126 | 32 | 169 |
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsay 129 +vvtvrCGhC +l+svn+ + + + ++ + + + +++++s +++ + v+ e+ ++++++ pr+pp irPPekrqrvPsay DCAR_012254 2 TTVVTVRCGHCVNLFSVNMGPMLHSPPLQDL---------QRQAANGRRDCSSSS--SDECIKFVALES-AHDQHQQPPRMPP-IRPPEKRQRVPSAY 86 689******************9999888873.........233333333333333..333333333333.5677888899999.9************* PP YABBY 130 nrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 nrfikeeiqrik+ Pdishreafs+aaknWahfP+ih++ DCAR_012254 87 NRFIKEEIQRIKSVKPDISHREAFSTAAKNWAHFPHIHYD 126 **************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.6E-51 | 1 | 126 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.71E-7 | 72 | 121 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.0E-4 | 75 | 121 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MTTVVTVRCG HCVNLFSVNM GPMLHSPPLQ DLQRQAANGR RDCSSSSSDE CIKFVALESA 60 HDQHQQPPRM PPIRPPEKRQ RVPSAYNRFI KEEIQRIKSV KPDISHREAF STAAKNWAHF 120 PHIHYDQKRD NSNKLQKSDD HAVAGEITPK THHLY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238644.1 | 1e-114 | PREDICTED: putative axial regulator YABBY 2 isoform X3 | ||||
Swissprot | Q9XFB0 | 2e-52 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A166C9Z8 | 1e-113 | A0A166C9Z8_DAUCS; Uncharacterized protein | ||||
STRING | VIT_06s0009g00880.t01 | 1e-59 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-42 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012254 |
Publications ? help Back to Top | |||
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