PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 652aa MW: 73004.1 Da PI: 5.69 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 286.8 | 6.1e-88 | 167 | 540 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilkfs 94 l +lLl++Ae + +g+ a+++La + as +g+p++Rl++yf AL++r++r ++s+ ++++ ++ +++ + ++++ +e P+ k+ DCAR_012253 167 LAHLLLSAAEKIWDGKIDSARRMLAFCQCKASRSGNPIERLTSYFSAALQERISReTGSRRISTISDNARTPNFNGLFTGVDQTavaIHEYIPFSKVL 264 579****************************************************777777777766666666544444444444569********** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 h++ q+Ile ve+e+ +H iD+ i G+QWp+++qaL++R+ + l+iT+++ ++k+ +e +g+rL++fA+ l+++f+fnv+ ++++++l+ DCAR_012253 265 HFASTQTILEHVENETDIHLIDLHIRSGMQWPPMIQALSERKdYPIKYLKITALDT---VDKQIVEDIGKRLESFANPLNISFSFNVVSVDDISNLNK 359 *****************************************9666779*******9...79************************************* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 e ++v++gEa+++ l ++l ++ ++e+ +++++k+l+P ++++ e ea+ ns+sF +rf+e+l +ys+ fd+le+ l r++++r+++Er++ DCAR_012253 360 ELFDVQSGEAVVIYAPTILRTMLPRPDKMEN----LMRVIKELNPLIMILHEIEANDNSPSFINRFVETLFFYSTWFDCLEECLDRDNQHRKTLERHY 453 ***********************88888888....*************************************************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +gr i n +a+eg+er+ r +l Wr+ + ++ + +v++ e+ qa+ +l+k ++ + ++ ++ ++l++ Wk+ p++s+S W+ DCAR_012253 454 FGRGIINTLATEGEERITRSVKLDVWRSYFVRCQMVEVEVPESSFHQAEVVLKKgFScARFCTLSSDGKCLMIAWKGTPVFSLSTWK 540 **************************************************998736667778999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.89 | 141 | 518 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-85 | 167 | 540 | IPR005202 | Transcription factor GRAS |
CDD | cd01769 | 2.20E-7 | 533 | 591 | No hit | No description |
Gene3D | G3DSA:3.10.20.90 | 4.1E-9 | 544 | 591 | No hit | No description |
Pfam | PF00240 | 5.1E-9 | 544 | 591 | IPR000626 | Ubiquitin domain |
SuperFamily | SSF54236 | 5.53E-9 | 544 | 591 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 10.898 | 545 | 591 | IPR000626 | Ubiquitin domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MSGYIGISSS NIVQTGDNRP VEVLKEENFS RAVEVSVSRL EEPGEPSIDK GKIAEVGFGD 60 LVSPSLGPRV DSPAVKQRPG FGSASLFELL SRYERGGKRL SDHENLGNPS CESSSRQKLS 120 TEEIIRVAAE RYIEFPSKDL DCVTTFIHPY GSALSSLSLE ETSGADLAHL LLSAAEKIWD 180 GKIDSARRML AFCQCKASRS GNPIERLTSY FSAALQERIS RETGSRRIST ISDNARTPNF 240 NGLFTGVDQT AVAIHEYIPF SKVLHFASTQ TILEHVENET DIHLIDLHIR SGMQWPPMIQ 300 ALSERKDYPI KYLKITALDT VDKQIVEDIG KRLESFANPL NISFSFNVVS VDDISNLNKE 360 LFDVQSGEAV VIYAPTILRT MLPRPDKMEN LMRVIKELNP LIMILHEIEA NDNSPSFINR 420 FVETLFFYST WFDCLEECLD RDNQHRKTLE RHYFGRGIIN TLATEGEERI TRSVKLDVWR 480 SYFVRCQMVE VEVPESSFHQ AEVVLKKGFS CARFCTLSSD GKCLMIAWKG TPVFSLSTWK 540 FEQNSDTVES VKKQIANENG VAVADVEELR LAFAGRELED HRVIGDYPIH NVEAQVGAGF 600 QGLGIIKRTL SFGFLYLVIS AGSLAVCNKR LVLYIVVVRQ VLIGTGWKFE L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-35 | 190 | 540 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240025.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A161Y2V0 | 0.0 | A0A161Y2V0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-50 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012253 |