PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27531 Da PI: 6.5148 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.4 | 1.1e-43 | 5 | 135 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrF Pt+eelv++yL ++++g++ ++l++vi+ vdiy++eP++Lp+ +++++++w+fF++ ++++a+g r+nr+t+sgyWkatg+ v+s DCAR_012209 5 QPGFRFYPTEEELVSFYLSHRLQGHNqTDLDRVIPVVDIYDLEPSQLPNysgeLCREDKEQWFFFVPMHEREARGGRTNRTTASGYWKATGSPSYVYS 102 69*********************9985677778***************646654445777************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++++g+kkt+v+y+g+ap g+kt+W m+ey+ DCAR_012209 103 SQNKVIGVKKTMVYYRGKAPLGRKTRWKMNEYK 135 ********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-45 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.217 | 4 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-23 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MATFQPGFRF YPTEEELVSF YLSHRLQGHN QTDLDRVIPV VDIYDLEPSQ LPNYSGELCR 60 EDKEQWFFFV PMHEREARGG RTNRTTASGY WKATGSPSYV YSSQNKVIGV KKTMVYYRGK 120 APLGRKTRWK MNEYKAIEEQ VIAGASTSCA APRLRHEMSV CRVYVISGTF RAFDRRPLGT 180 AIMEPVDEPQ DGQENIVTRT SSSAEYIYRE TDIGNTMIID NAGVSCSEPM IIHHAAPFSG 240 ED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 3 | 164 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238990.1 | 0.0 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 9e-79 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A162AN07 | 0.0 | A0A162AN07_DAUCS; Uncharacterized protein | ||||
STRING | XP_009759500.1 | 2e-89 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-81 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012209 |
Publications ? help Back to Top | |||
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