PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011976
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 327aa    MW: 36524.1 Da    PI: 8.317
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011976genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19185218134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  DCAR_011976 185 CSDCNTTKTPLWRSGPQGPKSLCNACGIRQRKAR 218
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.02179215IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-20179231IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13181222No hitNo description
Gene3DG3DSA:3.30.50.102.2E-15183218IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.16E-11184212No hitNo description
PROSITE patternPS003440185210IPR000679Zinc finger, GATA-type
PfamPF003203.5E-17185218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTPTYLNLLA SPPSTSADHG DLLQQTSIFG SNNYQDASSC SYITTHNFFD LETTKNQSDE  60
ICRQDIQQSQ FRQDLADNLA SSHGGSFDIE NETSDTGLKF SIWKQEEKYA NQESTYNYNN  120
EIKLMSPKMR WMHKMKNDVD SPPLKTTTTL IKLGDQKPPP SSPIGADNTS NTSSNSMISH  180
PIRTCSDCNT TKTPLWRSGP QGPKSLCNAC GIRQRKARRA MAAAANDTAF EKETTPPAVI  240
KTKKYNKLKT KTKQEKDKTC VSVAKFKKRS CNLMIEGEDE AGKKVCLEDF LLNLTNNLAY  300
HQVLPQDEKD AAILLMAMSL HHTHRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238839.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A166C3430.0A0A166C343_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-23cytokinin-responsive gata factor 1