PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011853
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 374aa    MW: 41225.8 Da    PI: 4.6358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011853genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-1791140255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr++  +g+WvAeIr+ps      r +lg+f  a eAa a+++a+++++g
  DCAR_011853  91 NFRGVRQRT-WGKWVAEIREPSG---GSRLWLGTFPNAVEAALAYDEAARAMYG 140
                  69****999.**********953...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.14E-3190149No hitNo description
SuperFamilySSF541712.29E-1990149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-2991149IPR001471AP2/ERF domain
SMARTSM003804.7E-3391155IPR001471AP2/ERF domain
PfamPF008473.2E-1191140IPR001471AP2/ERF domain
PROSITE profilePS5103220.24491148IPR001471AP2/ERF domain
PRINTSPR003671.9E-892103IPR001471AP2/ERF domain
PRINTSPR003671.9E-8114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLANIVQRNS VMGIMKQDSD TGTPRIGDSR KRKSRSTKTK SVAETLAMWR DHNKKLDALN  60
ASAKPIRNFH AKGSKKGCMK GKGGPDNTRS NFRGVRQRTW GKWVAEIREP SGGSRLWLGT  120
FPNAVEAALA YDEAARAMYG AGARLNLPDF SSYKESSGGS AAPSMSCADS VLTHTSSNHT  180
GACAYTDPKV GIDDLEMKCS DVEGESKAPA IEMKCSDVEG ESKASEAQNY QSPAVVEAMN  240
EVKDERVEIK KEQEDNNDVF NMDKGLLLGE MFDVDELLQS LNTYTLPDQA SNTEWFYNND  300
QDIGHFLQDV ELISNPSDLS IQQQYPDIKP DDMFNEQTGY NQDLDFLLPG RPEDSNFLPD  360
ELKLLSMDAN SGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1691148260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1882940.0AB188294.1 Daucus carota C-EF6 mRNA for embryonic element binding Factor 6, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238672.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A161Y1Q80.0A0A161Y1Q8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-25DRE-binding protein 2A