PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011188
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 446aa    MW: 49850.8 Da    PI: 9.2168
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011188genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP66.92.6e-212893171
      E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 rk+ksL ll+++flkl+++ + + v ++ +a +L    v  +rRRiYDi+N++e+++++ +k+kn++ wkg
  DCAR_011188 28 RKDKSLALLCSNFLKLYNRDDVECVGVDAAAAQL---GV--ERRRIYDIVNIMESIGVLVRKAKNQYCWKG 93
                 79*****************999************...**..****************************98 PP
2E2F_TDP68.77.1e-22134214171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                  rkeksL ll+++f+kl+ +s ++i++l+++a++L  +      +++k RR+YDi+NV+ ++nliek     + k+++rw g
  DCAR_011188 134 RKEKSLALLAKNFVKLFLRSGADIISLDSAATALPGDvhdttAMRTKARRLYDIANVFASMNLIEKvrhpeSGKPAFRWLG 214
                  79********************************777999**************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-242495IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-142791IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.6E-262893IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-182993IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-22130216IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-25134214IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-17135214IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.21E-10136215IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSSSLSLSSY SSLFGYDTLN PSVSNYSRKD KSLALLCSNF LKLYNRDDVE CVGVDAAAAQ  60
LGVERRRIYD IVNIMESIGV LVRKAKNQYC WKGFDAIPQA LHDLQISNEK ETERSPSDSN  120
KEEKSVSCPK TESRKEKSLA LLAKNFVKLF LRSGADIISL DSAATALPGD VHDTTAMRTK  180
ARRLYDIANV FASMNLIEKV RHPESGKPAF RWLGMKQKSS NALEAGSGLN DTRMRVFGTE  240
ITNTASKRFA ESISNCQSSG KQINVEMGND ENLLKQHQLH QSKDPESGEP AFRQLVQNSR  300
SALETGFGSN DNKRRTFGTE ITNTASKRFK DNSLSNCRSS EKVSVPTYAK QHNVKTENDE  360
NSMKQHQRHQ SKGFVFGPFS PASIRDLDAL ENNKVGRIQD WEQLASTYFP RYQNQAVSDL  420
ITHYADAWKS WLVEVDEKKP TQTAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-29272003222Transcription factor E2F8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240492.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLA0A166B6Z50.0A0A166B6Z5_DAUCS; Uncharacterized protein
STRINGVIT_14s0066g02370.t019e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.13e-80DP-E2F-like protein 3