PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011175
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 333aa    MW: 37152.5 Da    PI: 5.9909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011175genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd + + +v+ +G g+W++++++ g++R++k+c++rw +yl
      DCAR_011175 14 KGPWTPEEDAKVLAYVANHGIGNWTLVPEKAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.48.8e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T++E+  ++ +++  G++ W++Ia++++ gRt++++k++w++
      DCAR_011175  68 DAFTPQEENHILVLHQAVGSR-WSLIAKHLP-GRTDNDVKNHWNT 110
                      589******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.297965IPR017930Myb domain
SuperFamilySSF466891.05E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-141363IPR001005SANT/Myb domain
PfamPF002494.2E-161461IPR001005SANT/Myb domain
CDDcd001671.53E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.6E-2465116IPR009057Homeodomain-like
SMARTSM007171.0E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129417.75966116IPR017930Myb domain
PfamPF002491.4E-1369110IPR001005SANT/Myb domain
CDDcd001676.41E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRPPCCDKS NVKKGPWTPE EDAKVLAYVA NHGIGNWTLV PEKAGLNRCG KSCRLRWTNY  60
LRPDLKHDAF TPQEENHILV LHQAVGSRWS LIAKHLPGRT DNDVKNHWNT KLRKKLMKMG  120
IDPVTHKPIS QILTDFGNIS PFPNSRNHVD PLNGFANNFM SNSEASVVTT DYAIPPMLNT  180
TMLEQVQDNH FGNNYVWENA EASFQAKTQE ISSPLKSLAS CHVTELSSPQ SLPWKSSQLQ  240
PMQSSSSGWN DFLLNDLSLL TDLEQQEEPK SNGIIAPSSC PSVPVQNEKC ENNFSEGSSS  300
SAVDSFVDSI LNQDKELQSE YPQIFSDGYF NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238387.10.0PREDICTED: transcription factor MYB35 isoform X1
RefseqXP_017238388.10.0PREDICTED: transcription factor MYB35 isoform X1
RefseqXP_017238389.10.0PREDICTED: transcription factor MYB35 isoform X1
RefseqXP_017238390.10.0PREDICTED: transcription factor MYB35 isoform X1
TrEMBLA0A166B6P00.0A0A166B6P0_DAUCS; Uncharacterized protein
STRINGVIT_14s0066g02180.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-78MYB family protein