PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28685.3 Da PI: 10.2261 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.8e-15 | 21 | 104 | 9 | 99 |
HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d +k l +p kfa+ h g +k+ tl+ + sW v+ +++ ++++GWk F+k + L+ gD++vF++ ++sef +v +f++ DCAR_010938 21 DFSK--KLLIPPKFARLHPGT--LPKKCTLKPtGTQSSWPVRT--ILIDNHLYFKEGWKAFAKHHSLQYGDMLVFRYAQDSEF--YVDMFDN 104 3333..49**********766..66678877735569******..5556669*************************999999..9999986 PP | |||||||
2 | B3 | 48.6 | 1.5e-15 | 145 | 238 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+ ++ + +v ++g l +p +f + +++k ++ t +l + + W v+l ++++r v++kGW++F+k+n L+ D++vF+l++ ++ ++ v++f+ DCAR_010938 145 FKRTMQKTNVKSNGYLQIPLQFGRMYMKK-ITNYTSKLVS-LDKGWVVQL--LRGDKR-VFKKGWSNFAKENSLELDDVCVFQLINAKDNTFEVTIFK 237 667888899999**************544.3455666666.4589*****..888888.79************************999999*****99 PP S CS B3 99 k 99 k DCAR_010938 238 K 238 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-21 | 8 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-22 | 8 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.844 | 11 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.99E-15 | 12 | 103 | No hit | No description |
SMART | SM01019 | 1.6E-11 | 14 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-13 | 20 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-19 | 138 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-19 | 139 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.00E-17 | 143 | 237 | No hit | No description |
SMART | SM01019 | 8.4E-13 | 145 | 239 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.633 | 145 | 239 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 146 | 238 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTKTLNRSRR NPSFMKLLFS DFSKKLLIPP KFARLHPGTL PKKCTLKPTG TQSSWPVRTI 60 LIDNHLYFKE GWKAFAKHHS LQYGDMLVFR YAQDSEFYVD MFDNTCCLRE PVATSPALIL 120 PGQGNKNHPE TAADELILSS EFPSFKRTMQ KTNVKSNGYL QIPLQFGRMY MKKITNYTSK 180 LVSLDKGWVV QLLRGDKRVF KKGWSNFAKE NSLELDDVCV FQLINAKDNT FEVTIFKKPV 240 EYSLFSRC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241101.1 | 1e-180 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A166B0C0 | 0.0 | A0A166B0C0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3779 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 3e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010938 |