PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010853
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 316aa    MW: 34487.9 Da    PI: 9.186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010853genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++v+++G+++W++I++ +  gR++k+c++rw + 
      DCAR_010853 12 KGPWSPEEDDLLQQLVQKHGPRNWSLISKSIS-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP
2Myb_DNA-binding53.94e-1766108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
      DCAR_010853  66 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 108
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.639762IPR017930Myb domain
SuperFamilySSF466895.24E-329105IPR009057Homeodomain-like
SMARTSM007179.3E-171160IPR001005SANT/Myb domain
PfamPF002497.1E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-261365IPR009057Homeodomain-like
CDDcd001675.85E-161456No hitNo description
SMARTSM007172.9E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.73764113IPR017930Myb domain
CDDcd001671.25E-1166109No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2366112IPR009057Homeodomain-like
PfamPF002491.3E-1466108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSNTKRDVDR IKGPWSPEED DLLQQLVQKH GPRNWSLISK SISGRSGKSC RLRWCNQLSP  60
QVEHRAFTPE EDDTIIRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK RKSSSMGADD  120
FAHFQQPLKR SVSAGSGVPV SGLYLSPGSP SGSDVSDSGL SRLYRPVARA AGVFGAQVET  180
ANTPVCVNDP PTSLSLSLPG IGVDLNEHSN RVSEPTHVIE PMEVVAATPS PVAVVQQNPF  240
SMASVLKKPP LSHVPTSREK AEFVKETAGE EKEKPFVAFN AEFMGVMQEM IRKEVRNYMA  300
GQQHQTAIGI GMHSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-41111123104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-41111123104C-Myb DNA-Binding Domain
1msf_C6e-41111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241516.10.0PREDICTED: transcription factor MYB44
SwissprotO231602e-95MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A166AYD10.0A0A166AYD1_DAUCS; Uncharacterized protein
STRINGVIT_07s0129g01050.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-69myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]