PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 26215.7 Da PI: 8.8057 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.2 | 2.9e-13 | 109 | 139 | 26 | 56 |
-HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 26 saeereeLAkklgLterqVkvWFqNrRakek 56 s+++++eLAk+l+L rqV vWFqNrRa+ k DCAR_010783 109 SRKQKQELAKELNLRPRQVEVWFQNRRARTK 139 789**************************98 PP | |||||||
2 | HD-ZIP_I/II | 92.5 | 4.8e-30 | 109 | 174 | 25 | 91 |
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + ++K+ela+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eL+ +l DCAR_010783 109 SRKQKQELAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTDENRRLQKEVQELK-AL 174 5789***********************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0011 | 102 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-12 | 109 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-10 | 109 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.53E-11 | 109 | 142 | No hit | No description |
PROSITE profile | PS50071 | 13.345 | 109 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-11 | 109 | 150 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.4E-26 | 141 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.3E-11 | 141 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGFDRNVCET GLKLGLGFSP AVEIIPAKAG NHSHPCRPKA VALSFEPSLT LGLVSGDKVN 60 DGFVIKPSSC EILYRQDSTG ASSFSNASVK REREQRGSEE TETTARVSSR KQKQELAKEL 120 NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KKCCETLTDE NRRLQKEVQE LKALKVAQPL 180 YMQLPAATLT MCPSCERVGG SGGPPATSAD NSSKETFSSI TTPKPHFYNS FPNPSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017237931.1 | 1e-170 | PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2 | ||||
Swissprot | P46604 | 6e-64 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A166AWK1 | 1e-176 | A0A166AWK1_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055199 | 3e-80 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-66 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010783 |
Publications ? help Back to Top | |||
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