PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010568
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 575aa    MW: 63625.4 Da    PI: 4.9198
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010568genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.45.8e-4991381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp+G+rF+Ptdeel+++yL+ k++g + e+  vi+evdi+k+ePwdLp +  v++ ++ew+fF+++d+ky++g+r+nrat +gyWkatgkd+ ++s  
  DCAR_010568   9 LPVGYRFRPTDEELINHYLRLKINGFEKEV-AVIREVDICKCEPWDLPdMsLVHSIDNEWFFFCPKDRKYQNGQRSNRATVAGYWKATGKDRFIKSGk 105
                  799************************999.89**************96346667889*************************************974 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + +++g kktLvfy+grapkg++++Wv+hey +
  DCAR_010568 106 GMNVIGRKKTLVFYTGRAPKGNRSHWVIHEYCA 138
                  66779**************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-564161IPR003441NAC domain
PROSITE profilePS5100554.3819161IPR003441NAC domain
PfamPF023651.6E-2410137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MTVVPANTLP VGYRFRPTDE ELINHYLRLK INGFEKEVAV IREVDICKCE PWDLPDMSLV  60
HSIDNEWFFF CPKDRKYQNG QRSNRATVAG YWKATGKDRF IKSGKGMNVI GRKKTLVFYT  120
GRAPKGNRSH WVIHEYCATD EALSGMHPGQ GAFVLCRLFK KHDGKQDEMG ENSNCEEVEQ  180
NVSSPTVVKP SPEDTMSEQD TPVLSRLTGG FESNNGTPFS VDQCGYPSNK CIGEEAESDL  240
LGMISMQPNP DMEKLLGNFG QMPNNDVKFF PEDPMQVMQD YYQGSTLLGS GNDGDMDIAQ  300
FLDAILASSD DHSCEDSTSH PISGVDNDSP KYVNCLPKIS AKDSGSSSDS DVARVYDQPD  360
LGDYLNDEFL KEAQQFPSLM MIRPTREGVY PEYRNEQSQI NLQSMQNRLD VPSDVSSAST  420
GIKIRSRQSN NQRAQNLVSH GTAPRRIRLQ MKLQVGSTHG CLAKNTSLPD ENMEVPIIEG  480
NTEQAASLTS TTSDAVSTTD EHVDSLWQDK EVSQEQSMNI KPKSDLQFQI KAPSIITKAP  540
VLRSVPSALQ IHGKFLAIGM ALAAAVALLG CFVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-41816616170NO APICAL MERISTEM PROTEIN
1ut4_B6e-41816616170NO APICAL MERISTEM PROTEIN
1ut7_A6e-41816616170NO APICAL MERISTEM PROTEIN
1ut7_B6e-41816616170NO APICAL MERISTEM PROTEIN
3swm_A6e-41816619173NAC domain-containing protein 19
3swm_B6e-41816619173NAC domain-containing protein 19
3swm_C6e-41816619173NAC domain-containing protein 19
3swm_D6e-41816619173NAC domain-containing protein 19
3swp_A6e-41816619173NAC domain-containing protein 19
3swp_B6e-41816619173NAC domain-containing protein 19
3swp_C6e-41816619173NAC domain-containing protein 19
3swp_D6e-41816619173NAC domain-containing protein 19
4dul_A6e-41816616170NAC domain-containing protein 19
4dul_B6e-41816616170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242586.10.0PREDICTED: NAC domain-containing protein 91-like
TrEMBLA0A169W8L70.0A0A169W8L7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-79NAC transcription factor-like 9