PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010245
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 444aa    MW: 50783.7 Da    PI: 6.6655
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010245genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.51.8e-23120217186
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +Wt+ +v+ Li+a+++++e+  ++            +kk++W++vsk+m+er + +sp+qC++k+++lnkryk+++e+ +++ ++e++++ ++++ ++
  DCAR_010245 120 KWTDTMVRILITAVSYIGEDAAAEYgggarrkyanlQKKGKWKSVSKVMAERSYFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENNSLLEVMD 217
                  7**************999999975334456667778**********************************************6699999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-22118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEGNLQSGSM LGMGSYGGGL DLQGSMRVHH HQQPSSLQQQ HNSNPRQGSI VHPSIHENFA  60
HPSGGGQDYD QTILLAEYSK VDRAKHSASD EEELSLTDDA ADGHSHGSRG KNISPWHRVK  120
WTDTMVRILI TAVSYIGEDA AAEYGGGARR KYANLQKKGK WKSVSKVMAE RSYFVSPQQC  180
EDKFNDLNKR YKRLNEILGR GTSCEVVENN SLLEVMDHIP EKLKEEVRKI LSSKHLYYEE  240
MCSYHNGNRL HLPPDPELQH SLRLALRSKD DHENDTRKHP HHEIDDDDQD IEMEDRDVEN  300
HATHGDHRGT YGMSGASMKR VKQCQVHENV ALGSSLSSLD CNRTFNSQAQ VANVDMNQVL  360
PEGMNANLSQ AQWMEHHSMQ IERQKLQLEV QMLELEKERF KWKRCCRKRD KELEVMRMEN  420
ERMKLENEHM ALELKRKEMG ADT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243444.10.0PREDICTED: uncharacterized protein LOC108215449
TrEMBLA0A166AMA70.0A0A166AMA7_DAUCS; Uncharacterized protein
STRINGXP_006473052.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-129sequence-specific DNA binding transcription factors