PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 37345 Da PI: 8.6569 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.6 | 9.9e-53 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g+ DCAR_009973 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIMS-QGK 109 79***************************9.89***************7777799***************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+apkg+kt+W+mheyrl DCAR_009973 110 KVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-67 | 10 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.503 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGLQDTDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIIMSQGKK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLS EPQRRNGSSK LDDWVLCRIY KKNSSAQKTL SGGIVSTEAS 180 HSHGSSSSCS SQFNDVMEAL PEIDDRFFAL PRMNSLSDKL NFQNLGSGNF DWAALAEQVS 240 GAPAAAVTQT QGLMSNRNNV DNTNGLYVPC NLVSQPGGVD TKIERSIDEE VQSGLRNHGS 300 EFMSFNNYSQ CFTNATDPFS IRYPSQPGNM AFRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-113 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00012 | PBM | Transfer from AT1G52890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017237525.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-141 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A166AGM0 | 0.0 | A0A166AGM0_DAUCS; Uncharacterized protein | ||||
STRING | XP_006464708.1 | 1e-150 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-122 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009973 |
Publications ? help Back to Top | |||
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