PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_009852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 179aa MW: 20319 Da PI: 6.7423 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.6 | 1.4e-28 | 12 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLp.kkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdke 91 pGf+FhPt el+v+yL+ kv g + + + ++vd+y+ v P++L+ ++ ++++ +yfFs+ +kk+ +gk+ +r+ t+ gyWka+ k e DCAR_009852 12 KPGFHFHPTALELIVHYLQTKVLGVSYHQGIINEHVDLYRdVTPEQLKgDAIIHRNEYMYFFSQVAKKHVNGKKCSRVvvddqgTSLGYWKASQKGAE 109 69************************9884445566*99736*****954555666788******************7789988889*********** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +l ++g ++gl + Lvfy + +g+kt W+m ey+l DCAR_009852 110 ILGANGVAIGLETRLVFY---TADGRKTAWLMIEYKL 143 ******************...678899********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-31 | 9 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.461 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-18 | 13 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence Send to blast |
MEQEAEHSAK VKPGFHFHPT ALELIVHYLQ TKVLGVSYHQ GIINEHVDLY RDVTPEQLKG 60 DAIIHRNEYM YFFSQVAKKH VNGKKCSRVV VDDQGTSLGY WKASQKGAEI LGANGVAIGL 120 ETRLVFYTAD GRKTAWLMIE YKLADNPYHK MDREWTICKV YEGGRTSHEE DAEGILEH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-21 | 11 | 162 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-21 | 11 | 162 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-21 | 11 | 162 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-21 | 11 | 162 | 17 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
3swm_B | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
3swm_C | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
3swm_D | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
3swp_A | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
3swp_B | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
3swp_C | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
3swp_D | 5e-21 | 2 | 162 | 11 | 167 | NAC domain-containing protein 19 |
4dul_A | 5e-21 | 11 | 162 | 17 | 164 | NAC domain-containing protein 19 |
4dul_B | 5e-21 | 11 | 162 | 17 | 164 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238947.1 | 1e-132 | PREDICTED: NAC domain-containing protein 100-like | ||||
TrEMBL | A0A166ADS4 | 1e-131 | A0A166ADS4_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04060.1 | 2e-25 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_009852 |