PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009764

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 248aa MW: 28460.8 Da PI: 7.9735

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009764	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.3	2.5e-33	10	100	1	91
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCa+C+++r+kC+++C+lapyfp +++k+f++vhklFG+snv+k+l+ l+ +r++a++slv+eA +r++dP+ G++g ++++ ++le + DCAR_009764 10 ACASCRHQRKKCTENCILAPYFPLNKNKEFQAVHKLFGVSNVTKILSGLDVRDRQRAVDSLVWEATCRQNDPILGSFGEFSRVYEELEWYR 100 7******************************************************************************999998887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.885	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-32	10	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MQKENGLPAA CASCRHQRKK CTENCILAPY FPLNKNKEFQ AVHKLFGVSN VTKILSGLDV 60 RDRQRAVDSL VWEATCRQND PILGSFGEFS RVYEELEWYR YQFRSNFQTV APENNMSFLD 120 NRGFNTSSNS AFMSLNKNRN SSLYSGYNSY ESFQCTDRLR DELSYNCSSV QNTERFKEDS 180 NNSSVILPQQ YGVQHAENFK EERNNSSMIV PQQYTMSTTF NQPYYQLAGT KCNIIELLLS 240 KHAILSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-21	6	90	7	91	LOB family transfactor Ramosa2.1
5ly0_B	4e-21	6	90	7	91	LOB family transfactor Ramosa2.1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238171.1	1e-173	PREDICTED: LOB domain-containing protein 2-like
TrEMBL	A0A166ABU6	0.0	A0A166ABU6_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	9e-38	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	DCAR_009764